View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_42 (Length: 444)
Name: NF1511_low_42
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 29787748 - 29788045
Alignment:
| Q |
9 |
gaagaatatatataatagtgtatataatttatacgagcttaaatatttaagataaagaaggttattgaattgaaactatataataagtttgtaaannnnn |
108 |
Q |
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| T |
29787748 |
gaagaatatatataatagtgtatataatttatacgagcttaaatatttaagataaagaaggttattgaattgaaactatataataagtttgtaaattttt |
29787847 |
T |
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| Q |
109 |
nnggttggttgcatggtatagattaccattaatgtgctatggtgagtttccaatgtagtactgtgaagcttcgtggaattttcctaactctatcttgcat |
208 |
Q |
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| T |
29787848 |
ttggttggttgcatggtatagattaccattaatgtgctatggtgagtttccaatgtagtactgtgaagcttcgtggaattttcctaactctatcttgcat |
29787947 |
T |
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| Q |
209 |
aaattcacgtacatgtttgaaagtattttatttttggatggatatattggcattcatgggaaattggggaataggtgaactagtatagcttctgttgt |
306 |
Q |
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| T |
29787948 |
aaattcacgtacatgtttgaaagtattttatttttggatggatatattggcattcatgggaaattggggaataggtgaagtagtatagcttctgttgt |
29788045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 29788106 - 29788163
Alignment:
| Q |
367 |
gagtataattaatattgtt-actccattgatgatgaaattaaaatgaatcttcctata |
423 |
Q |
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| T |
29788106 |
gagtataattaatattgtttactccattgatgatggaaataacatgaatcttcctata |
29788163 |
T |
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