View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_43 (Length: 442)
Name: NF1511_low_43
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 23697436 - 23697026
Alignment:
| Q |
16 |
caatttcactcgtcatgccatttctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacc |
115 |
Q |
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| T |
23697436 |
caatttcactcgtcatgcaatttctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacc |
23697337 |
T |
|
| Q |
116 |
tgcggataaaatcaatatgccaaattttttcttacaaatcaaagcagaataactaatatttaagcaagcacccaaaataaaaatgcaaaagtagaattct |
215 |
Q |
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| T |
23697336 |
tgcggataaaaacaatatgacaaatttttttttacaaatcaaagcagaataactaatatttaagcaagcaccaaaaataaaaatgcaaaagtagaattct |
23697237 |
T |
|
| Q |
216 |
taacaaaagagaattgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatcttttccatctcttgtt |
315 |
Q |
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| T |
23697236 |
taacaaaagagaattgtctatacctgcatgaaatgcgagtacatccctcaattttctccacatagaagctgcactttggacatcttttccatctcttgtt |
23697137 |
T |
|
| Q |
316 |
cttagcaagttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaacctta |
415 |
Q |
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| T |
23697136 |
cttagcaagttccatggccattagatctttcctccctcgctcgccatcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaacctta |
23697037 |
T |
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| Q |
416 |
cattgtgcaca |
426 |
Q |
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| T |
23697036 |
cattgtgcaca |
23697026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 202 - 427
Target Start/End: Original strand, 23700682 - 23700907
Alignment:
| Q |
202 |
aaaagtagaattcttaacaaaagagaattgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatctt |
301 |
Q |
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| T |
23700682 |
aaaagtagaatttttaacaaaagagaattgaatatacctgcatgaaatgcgagtacatcccacaattttttccacatagaagccacactttggacatctt |
23700781 |
T |
|
| Q |
302 |
ttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtcttccaagctttgaaactctctacaatcaacaccagagt |
401 |
Q |
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| T |
23700782 |
ttccatctcttgttctttgcaagttccatggccattagatcttccatccctcgctcgccgtctttcaagctttgaaacactttacaatcaacacctgtgt |
23700881 |
T |
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| Q |
402 |
gccatgaaaccttacattgtgcacag |
427 |
Q |
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| T |
23700882 |
gccatgaaaccttacattgtgcacag |
23700907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 264 - 427
Target Start/End: Complemental strand, 23695057 - 23694894
Alignment:
| Q |
264 |
caattttctccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccgtc |
363 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |
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| T |
23695057 |
caattttttccacatagaagccacactttggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcaccatc |
23694958 |
T |
|
| Q |
364 |
ttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacag |
427 |
Q |
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|| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23694957 |
tttcaagcttagaaactctttacaatcaacacctatgtgccatgaaaccttacattgtgcacag |
23694894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 23700587 - 23700648
Alignment:
| Q |
57 |
ataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgc |
118 |
Q |
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| T |
23700587 |
ataatgggactgattattccaaggagaaccacagccatagcaaaattgattgccacacctgc |
23700648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 343
Target Start/End: Original strand, 8148820 - 8148963
Alignment:
| Q |
202 |
aaaagtagaattcttaacaaaagagaat--tgtctatacctgcatgaaatgcgagtgcacccctcaattttctccacatagaagctgcactttggacatc |
299 |
Q |
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||||||||||||||||||| |||| ||| ||||||||||||||| |||| || | || || | |||| |||||||||||| |||| ||||||| | |
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| T |
8148820 |
aaaagtagaattcttaacataagaaaatattgtctatacctgcatctaatgtgattacatccaccttttttttccacatagaagttgcatcttggacacc |
8148919 |
T |
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| Q |
300 |
ttttccatctcttgttcttagcaagttccatggccattagatct |
343 |
Q |
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|||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
8148920 |
ttttccatttctttttcttagcaagttccagagccattagatct |
8148963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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