View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_44 (Length: 438)
Name: NF1511_low_44
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 20681182 - 20680766
Alignment:
| Q |
19 |
gtacatcattataaatacggaagctatgtgaggaagtaactgcttgaactaacttatgggcaactacgttcgcttgcctcctcgagagtttgttaaattt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20681182 |
gtacatcattataaatacggaagctatgtgaggaagtaactgtctgagctaatttatgggcaactacgttcgcttgcctcctcgagagtttgttaaattt |
20681083 |
T |
|
| Q |
119 |
gtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctccggcgcctcgattaaagtagtcagccactcgcttcgagtcaatat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20681082 |
gtggaacaaaattgtatattgctatccataatagcttcagattcggtgatatctccggcgcctcgattaaagtagtcagccactcgcttcgagtcaactt |
20680983 |
T |
|
| Q |
219 |
caaaatccacattttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccactaagcacattggtgagaacc |
318 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20680982 |
caaaatccaca-tttgatagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttcttcgatatccactaagcacattggtgagaacc |
20680884 |
T |
|
| Q |
319 |
ataaagttttgg----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaaaaagaggcatcgaagttgca |
402 |
Q |
| |
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|||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
20680883 |
ataaagttttggcacgcacggactgcccctcttcatcatgaatgcatattccaataccacacctattcatagaagtcgaaaaagaggcatggacgttgca |
20680784 |
T |
|
| Q |
403 |
tttcactcttccacgcct |
420 |
Q |
| |
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|||||||||||||||||| |
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| T |
20680783 |
tttcactcttccacgcct |
20680766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 12189480 - 12189402
Alignment:
| Q |
20 |
tacatcattataaatacggaagctatgtgaggaagtaactgcttgaactaacttatgggcaactacgttcgcttgcctc |
98 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||| ||| | | |||||| ||| |||||||| |||||||||||| |
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| T |
12189480 |
tacatcattataaatatggaagctaggtgaagaagtagctgtctcagctaactcatgtgcaactacattcgcttgcctc |
12189402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 12433908 - 12433830
Alignment:
| Q |
20 |
tacatcattataaatacggaagctatgtgaggaagtaactgcttgaactaacttatgggcaactacgttcgcttgcctc |
98 |
Q |
| |
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|||||||||||||||| |||||||| |||| |||||| ||| | | |||||| ||| |||||||| |||||||||||| |
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|
| T |
12433908 |
tacatcattataaatatggaagctaggtgaagaagtagctgtctcagctaactcatgtgcaactacattcgcttgcctc |
12433830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 16332959 - 16332530
Alignment:
| Q |
19 |
gtacatcattataaatacggaagctatgtgaggaagtaactgcttgaactaacttatgggcaactacgttcgcttgcctcct-------------cgaga |
105 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||| ||| |||||| |||||||||| |||||||||||||||| ||||| |
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|
| T |
16332959 |
gtacatctttataaatacggaagctaggtgaggaagtagctgcctgagctaactcatgggcaactgcgttcgcttgcctcctaataaactcgactcgaga |
16332860 |
T |
|
| Q |
106 |
gtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctccggcgcctcgattaaagtagtcagccactcgc |
205 |
Q |
| |
|
|||| ||||| |||| | |||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16332859 |
gtttattaaaattgtagcacaaaattgtatattgttgtccataatagctccaaattcggtgatatctccggtgcctcgattaaagtagtcagccactcgc |
16332760 |
T |
|
| Q |
206 |
ttcgagtcaatatcaaaatccacattttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccactaagcac |
305 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |
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|
| T |
16332759 |
ttcgagtcaacttcaaaatccaca-tttggcagctgtaattcattaacccaccgcatagcatgatacaatccaagggcttctccaacatccactaagcac |
16332661 |
T |
|
| Q |
306 |
attggtgagaaccataaagttttgg----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaaaaagagg |
389 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16332660 |
attggtgagaatcataaagttttggcacgcacgaactgcccctcttcgtcaggaatgcatattccaataccacacctattcatagaagtcgagaaagagg |
16332561 |
T |
|
| Q |
390 |
catcgaagttgcatttcactcttccacgcct |
420 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
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| T |
16332560 |
catcgacattgcatttcactcttccacgcct |
16332530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 48250405 - 48250452
Alignment:
| Q |
103 |
agagtttgttaaatttgtggaacaaaattgtatattgctatccataat |
150 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
48250405 |
agagttcgataaatttgtggaacaaaactgtatattgctatccataat |
48250452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 30148131 - 30147704
Alignment:
| Q |
19 |
gtacatcattataaatacggaagctatgtgaggaagtaactgcttgaactaacttatgggcaactacgttcgcttgcctcctc-------------gaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| ||| ||| || || | |||||||||||||||||||||| |||| |
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| T |
30148131 |
gtacatcattataaatacggaagctagatgaggaagtagctgcctgagctacctcatagtcaactacgttcgcttgcctcctaataaactcgacatgaga |
30148032 |
T |
|
| Q |
106 |
gtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctccggcgcctcgattaaagtagtcagccactcgc |
205 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||| |
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|
| T |
30148031 |
gtttgttaaacttgtggaacaaaactgtatattgctattcataatagctccaaattcggtgatatcttcgttgccccgattaaagtagtcagccactcgc |
30147932 |
T |
|
| Q |
206 |
ttcgagtcaatatcaaaatccacattttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccactaagcac |
305 |
Q |
| |
|
||||| |||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
30147931 |
ttcgaatcaacttcaaaatccaca-tttggaagccgtaattcattaacccacctcatagcatgatacaatccaagagcttctccgacatccactaaacac |
30147833 |
T |
|
| Q |
306 |
attggtgagaaccataaagttttgg----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaaaaagagg |
389 |
Q |
| |
|
|| ||||||||||| || ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
30147832 |
ataggtgagaaccacaatgtttttgcgcgaacaaactgcccctcttcgtcacgaatacatattccaataccacacctattcatagaagccgaaaacgagg |
30147733 |
T |
|
| Q |
390 |
catcgaagttgcatttcactcttccacgc |
418 |
Q |
| |
|
|||| | ||||||||||||||||||||| |
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|
| T |
30147732 |
catccacattgcatttcactcttccacgc |
30147704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 231 - 417
Target Start/End: Complemental strand, 33099057 - 33098855
Alignment:
| Q |
231 |
tttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccactaagcacattggtgagaaccataaagttttgg |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||| |
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|
| T |
33099057 |
tttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgacatccattaagcacattggtgagaaccatacaaatttgg |
33098958 |
T |
|
| Q |
331 |
----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaaaaagaggcatcgaagttgcatttcactcttcc |
414 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33098957 |
cacgcacgaactgcccctcttcgtcacgaatgcatattccaatacctcacctattcatagaaatcgaaaaagaggcatcgacattgcatttcactcttcc |
33098858 |
T |
|
| Q |
415 |
acg |
417 |
Q |
| |
|
||| |
|
|
| T |
33098857 |
acg |
33098855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 27534588 - 27534548
Alignment:
| Q |
291 |
atatccactaagcacattggtgagaaccataaagttttggc |
331 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
27534588 |
atatccacaaaacacatgggtgagaaccataaagttttggc |
27534548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 17459415 - 17459343
Alignment:
| Q |
102 |
gagagtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctcc |
174 |
Q |
| |
|
||||||||||||| | ||| |||||| || ||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
17459415 |
gagagtttgttaagtaagtgttacaaaagtggatattactatccataatagaaccaaattcggtgatatctcc |
17459343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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