View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_45 (Length: 437)
Name: NF1511_low_45
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 18037393 - 18037805
Alignment:
| Q |
17 |
gtgacaagattttcattccatggatggatcttaagttgaatgatttgccaataaaattgggaaaaaatgtctattatgttaacccaaaaacatacttcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18037393 |
gtgacaagattttcattccatggatggatcttaagttgaatgatttgccaataaaattgggaaaaaatgtctattatgttaacccaaaaacatacttcat |
18037492 |
T |
|
| Q |
117 |
ctataaacattttatgttaaccaaaagcttgataaatatttcaaaccccnnnnnnnnnngcttgatgattatcctttggtaataacatgaaccatgaaat |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18037493 |
ctataaacattttatgttaaccaaaagcttgataaatatttcaaaccccaaaaaacaaagcttgatgattatcctttggtaataacatgaaccatgaaat |
18037592 |
T |
|
| Q |
217 |
atcctcccagnnnnnnngcaccggaatgaactgtacacgtgctatctctaagttcttttgttaggaaaacaatctactactttttgttacaagatatcca |
316 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18037593 |
atcctcccagaaaaaaagcaccggaatgaattgtacacgtgctatctctaagttcttttgtcaggaaaacaatctactactttttgttacaagatatcca |
18037692 |
T |
|
| Q |
317 |
tctaaaatcattaccattgaacatttaaattacgaatcaa--tgactagaattgtatttggatatggtacnnnnnnngattcatttgtgtatcctaaatg |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18037693 |
tctaaaatcattaccattgaacatttaaattatgaatcaattttactagaattgtatttggatatggtacaaaaaaagattcatttgtgtatcctaaatg |
18037792 |
T |
|
| Q |
415 |
ccaccaagaataa |
427 |
Q |
| |
|
|||||| |||||| |
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|
| T |
18037793 |
ccaccaggaataa |
18037805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 31326705 - 31326299
Alignment:
| Q |
17 |
gtgacaagattttcattccatggatggatcttaagttgaatgatttgccaataaaattgggaaaaaa-tgtctattatgttaacccaaaaacatacttca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |
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|
| T |
31326705 |
gtgacaagattttcattccatggatggatcttaagttgaatgatttgccaataaaattgggaaaaaaatgtctattatgttaacccaaaaatatacttaa |
31326606 |
T |
|
| Q |
116 |
tctataaacattttatgttaaccaaaagcttgataaatatttcaaaccccnnnnnnnnnngcttgatgattatcctttggtaataacatgaaccatgaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
31326605 |
tctataaacattttatgttaaccaaaagcttgataaatatttcaaacccccaaaaaaaaagctagatgattatcctttggtaataacaggaaccatgaaa |
31326506 |
T |
|
| Q |
216 |
tatcctcccagnnnnnnn--gcaccggaatgaactgtacacgtgctatctctaagttcttttgttaggaaaacaatctactactttttgttacaagatat |
313 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31326505 |
tatcctcccagaaaaaaaaagcaccggaatgaactgtacacgtgctatctctaagttcttttgtcaggaaaacaatctactactttttgttacaagatat |
31326406 |
T |
|
| Q |
314 |
ccatctaaaatcattaccattgaacatttaaattacgaatcaatgactagaattgtatttggatatggtacnnnnnnngattcatttgtgtatcctaaat |
413 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
31326405 |
ccttctaaaatcattaccattgaacatttaaattatgaatcaatggctagaattgtatttgggtatggtacaaaaaaagattcatttgtgtatcctaaat |
31326306 |
T |
|
| Q |
414 |
gccacca |
420 |
Q |
| |
|
||||||| |
|
|
| T |
31326305 |
gccacca |
31326299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 53465734 - 53465328
Alignment:
| Q |
17 |
gtgacaagattttcattccatggatggatcttaagttgaatgatttgccaataaaattgggaaaaaatgtctattatgttaacccaaaaacatacttcat |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
53465734 |
gtgacaagattttcatttcatggatggatcttaagttgaatgatttgccaataaaattgggaaaaaaatgctattatgttaacccaaaaacatacttaat |
53465635 |
T |
|
| Q |
117 |
ctataaacattttatgttaaccaaaagcttgataaatatttcaaaccccnnnnnnnnnngcttgatgattatcctttggtaataacatgaaccatgaaat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
53465634 |
ctataaacattttatgttaaccaaaagcttgataaatatttcaaaccccaaaaaaaaa-gcttgatgattatcctttggtaatagaaggaaccatgaaat |
53465536 |
T |
|
| Q |
217 |
atcctcccagnnnnnnn---gcaccggaatgaactgtacacgtgctatctctaagttcttttgttaggaaaacaatctactactttttgttacaagatat |
313 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
53465535 |
atcctcccagaaaaaaaaaagcatcggaatgaactgtacacgtgctatctctaagttcttttgtcacgaaaacaatctactactttttgttacaagatat |
53465436 |
T |
|
| Q |
314 |
ccatctaaaatcattaccattgaacatttaaattacgaatcaatgactagaattgtatttggatatggtacnnnnnnngattcatttgtgtatcctaaat |
413 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
53465435 |
ccttctaaaatcattaccattgaacatttaaattatgaatcaatggctagaattgtatttgggtatggtacaaaaaaagattcatttgtgtatcctaaat |
53465336 |
T |
|
| Q |
414 |
gccaccaa |
421 |
Q |
| |
|
|||||||| |
|
|
| T |
53465335 |
gccaccaa |
53465328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 19078090 - 19078190
Alignment:
| Q |
319 |
taaaatcattaccattgaacatttaaattacgaatcaatgactagaattgtatttggatatggtacnnnnnnngattcatttgtgtatcctaaatgccac |
418 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||||||| ||||||||| ||||||||||| ||| | ||||||||||||||||||||||||| |
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|
| T |
19078090 |
taaaatcattaccgttgaagttttaaattatgaatcaatggctagaattgaatttggatatgatacacaaaaagtttcatttgtgtatcctaaatgccac |
19078189 |
T |
|
| Q |
419 |
c |
419 |
Q |
| |
|
| |
|
|
| T |
19078190 |
c |
19078190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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