View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_48 (Length: 428)
Name: NF1511_low_48
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 26511436 - 26511811
Alignment:
| Q |
19 |
atctatcattttgttgattctccattatgtgtcacacttggtatatcaaaaatagaagaaacaactagagacgtggatgtgatttgttttgttttgttgc |
118 |
Q |
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| T |
26511436 |
atctatcattttgttgattctccattatgtgtcacacttggtatatcaaaaatagaagaaacaactagagacgtggatgtgatttgttttgttttgttgc |
26511535 |
T |
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| Q |
119 |
atgttataagataatagaaatattgaaaaatctacatagcataaaaaagttgtggctgcaaattctctacaaattttcatgtatcccccactcaaccaat |
218 |
Q |
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| T |
26511536 |
atgttataagataatagaaatattgaaaaatctacatagcataaaaaagttgtggctgcaaattctctacaaattttcatgtatcccccactcaaccaat |
26511635 |
T |
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| Q |
219 |
cctcgtcatttgttctaatctctctctccttggacctttgtctcagtgtcactattttctcattgcaacttgagtgnnnnnnnnnnnnncaaccaaattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26511636 |
cctcgtcatttgttctaatctctctctccttggacctttgtctcagtgtcactattttctcattgcaacttgagtgaaaaatcaaaaaacaaccaaattt |
26511735 |
T |
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| Q |
319 |
agaatttcttggaaaacaaaactactcttaaagttatgctatatttttggaaaaggataatttattaaactctgca |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26511736 |
agaatttcttggaaaacaaaactactcttaaagttatgctatatttttggaaaaggataatttattaaactctgca |
26511811 |
T |
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