View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_49 (Length: 420)
Name: NF1511_low_49
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 11345782 - 11345373
Alignment:
| Q |
12 |
tgtttttcttcagggaacatgat--tttcttttctttttataaagaaaaacttgtgcataagttgctaacttactagttgccagagatttggtttcatga |
109 |
Q |
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| T |
11345782 |
tgtttttctttaaagaacatgataatttcttttctttttaaaaataaaaacttgtgcataagttgctaacttatgagttgccagagatttggtttcatga |
11345683 |
T |
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| Q |
110 |
gaaaacttgtttatttaaatgacaatagttactgaataatggaatatttgtgcagattcttaggaatatcaccagaagctgatgtagaagcaatcaaaat |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11345682 |
gaaa-cttgtttatttaaatgacaatagttactgaataatggaatatttgtgcagattcttaggaatatcaccagaagctgatgtagaagcaatcaaaat |
11345584 |
T |
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| Q |
210 |
ggcattcaggaaactatcaaaggagtatcatccagacacaacttcactccctctaaaaacagcctcagaaaaattcatgaaattaaaagaagtttacact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11345583 |
ggcattcaggaaactatcaaaggagtatcatccagacacaacttcactccctctaaaaacagcctcagaaaaattcatgaaattaaaagaagtttacact |
11345484 |
T |
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| Q |
310 |
gttctgagcaatgaagaaagtaggaggttctatgattggacacttgctcaagaggttgcaagtcgccaacaagagaaattgaaaataaaattagaggatc |
409 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11345483 |
gttctgagcaatgaagaaagtaggagattctatgattggacacttgctcaagaggttgcaagtcgccaacaagagaaattgaaaataaaattagaggatc |
11345384 |
T |
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| Q |
410 |
cttatgaggta |
420 |
Q |
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| T |
11345383 |
cttatgaggta |
11345373 |
T |
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