View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_50 (Length: 415)
Name: NF1511_low_50
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 45389621 - 45390004
Alignment:
| Q |
18 |
aaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagagaaaggaatccacatgctattccctatatt |
117 |
Q |
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| T |
45389621 |
aaatggatatttttaacatcattcttgtttaatacttcttactcatcacttcaatatcttatgaaatagagaaaagaatccacatgctattccctatatt |
45389720 |
T |
|
| Q |
118 |
gaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaacaggggtcagtacagaacctg |
217 |
Q |
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| T |
45389721 |
gaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaacaggggtcagtacagaacctg |
45389820 |
T |
|
| Q |
218 |
gataaaaactgcaccagtgccatgtcttcttatccagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacata |
317 |
Q |
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| T |
45389821 |
aataaaaactgcaccagtgcaatgtcttcttatccagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacata |
45389920 |
T |
|
| Q |
318 |
tttcatgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
401 |
Q |
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| T |
45389921 |
tttcatgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
45390004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 45374463 - 45374846
Alignment:
| Q |
18 |
aaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagagaaaggaatccacatgctattccctatatt |
117 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45374463 |
aaatggatatttttaacatccttcatgtttaatacttcttactcattatttcaatatcctatgaaatagagaaaggaagccacatgctattccctatatt |
45374562 |
T |
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| Q |
118 |
gaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaacaggggtcagtacagaacctg |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45374563 |
gaatttttcaaattgcataagagaaagaaaagtgggcaacagtaaacgggcttacttgacatagttttgtcttgtgtaacaggggtcagtacagaacttg |
45374662 |
T |
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| Q |
218 |
gataaaaactgcaccagtgccatgtcttcttatccagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacata |
317 |
Q |
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||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45374663 |
aataaaaattgcaccagtgcgatgccttcttatccagacctagtatgtttccatgaactttcatcattagctcaggatgattgtacaagattctgacata |
45374762 |
T |
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| Q |
318 |
tttcatgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
401 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374763 |
tttcgtgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
45374846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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