View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_54 (Length: 408)
Name: NF1511_low_54
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 2113303 - 2113675
Alignment:
| Q |
20 |
gtaaccatgaccaaacatgaacatgaaacaccaccgtcaaaccgaacaaacctagcttcatgtttggtcgccaccgttttcttaatcttcattctcatca |
119 |
Q |
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| T |
2113303 |
gtaaccatgaccaaacatgaacatgaaacaccaccgtcaaaccgaacaaacctagcttcatgtttggtcgccaccgttttcttaatcttcattctcatca |
2113402 |
T |
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| Q |
120 |
taatcttcacactttacttcacacttttcaaacctcaagatccaaaaatctccgtcaccgccgttcaactcccatcattcaacctcaccaacaactccac |
219 |
Q |
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| T |
2113403 |
taatcttcacactttacttcacacttttcaaaccacaagatccaaaaatttccgtcaccgccgttcaactcccatcattcaacctcaccaacaactccac |
2113502 |
T |
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| Q |
220 |
caccgtcaacttcaccttctctcaatacacctctgttaaaaaccctaacagaggaacattctcacactacgacagttcctttcagcttctctcctatgga |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113503 |
caccgtcaacttcaccttctctcaatacacttctgttaaaaaccctaacagaggaacattctcacactacgacagttcctttcagcttctctcctatgga |
2113602 |
T |
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| Q |
320 |
aaacaaatcggtttcatgttcgttcctgctgggaagatcaatgcaagaagaactcagttcatggctgctacat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113603 |
aaacaaatcggtttcatgttcgttcctgctgggaagatcaatgcaagaagaactcagttcatggctgctacat |
2113675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 42053972 - 42053924
Alignment:
| Q |
220 |
caccgtcaacttcaccttctctcaatacacctctgttaaaaaccctaac |
268 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
42053972 |
caccgtcaacttcaccttctctcaatacgcctccgttagaaaccctaac |
42053924 |
T |
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