View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_55 (Length: 408)
Name: NF1511_low_55
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Original strand, 49812420 - 49812795
Alignment:
| Q |
14 |
caacaccagctgtgagcagaagctgaatggaaacaatgatgtaaactttacggatgaaaccccatcggagctcaggtgactctatcatcgacggatacag |
113 |
Q |
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| T |
49812420 |
caacaccagctgtgagcagaagctgaatggaaacaatgatgtaaactttacggatgaaaccccatcggagctcaggtgactctatcatcgacggatacag |
49812519 |
T |
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| Q |
114 |
gctgtcgccatgtgcgtgggaaaacccagcctcaatgtcacccttacccatgccggtgataaacacaaacaaacaacctccaaaacaaagaatatgtatg |
213 |
Q |
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| T |
49812520 |
gttgtcgccatgtgcgtgggaaaatccagcctcaatgtcacccttacccatgccggtgataaacacaaacaaacaacctccaaaacaaagaatatgtatg |
49812619 |
T |
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| Q |
214 |
atcaatgaagaattgaattggatatgcttttatatttcaatggcttaatttggttgtttattcggttgaaatagcgaatcttgtcttttttattttaaac |
313 |
Q |
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| T |
49812620 |
atcaatgaagaattgaattggatatgcttttatatttcaatggc----------tgtttattcggttgaaataacgaatcttgtcttttttattttaaac |
49812709 |
T |
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| Q |
314 |
cgaggcccatattgtaatgcattgtatatatagaaattgtttcgtttaattttggcatatgcgtgtgtgtgatttttgttgttcat |
399 |
Q |
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| T |
49812710 |
cgaggcccatattgtaatgcattgtatatatagaaattgtttcgtttaattttggcatatgcgtgtgtgtgatttttgttgttcat |
49812795 |
T |
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