View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_56 (Length: 406)
Name: NF1511_low_56
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 52941411 - 52941023
Alignment:
| Q |
16 |
ctacaaggcctggttctagtcaacggatagtgacattgccaaccaaagcaataccagaaattggaagaaatttgaataagaaattaggaaatgtcatttc |
115 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
52941411 |
ctacaaggcctgtttctaggcaccggatagtgacattgccaacccaatcaataccaggaattggaagaaatctgaataagaaattaggacaattcatttc |
52941312 |
T |
|
| Q |
116 |
atatgtatctccattattatggagaggcagatgtcggttatcatgcatgtcaacctcttctccagtacctacacatatatatatttcagttttactaagt |
215 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52941311 |
atatgtctctccatgattatggagatgcagatgtcgtttaccatgcatgtcaacctctactccagtacctacacatatatatatttcagttttactaagt |
52941212 |
T |
|
| Q |
216 |
ttttaactacatactcatttttaattatgtaaaagaacattaaaaataaatcaatgtttacttttgaaaaaattaaggcaatttgttttattttctcaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52941211 |
ttttaactacatactcatttttaattatgtaaaagaacattaaaaataaatcaatgtttacttttgaaaaaattaaggcaatttgttttattttctcaca |
52941112 |
T |
|
| Q |
316 |
caataaaacctatgaatatggtgaagttttatttaccaacaaactttggaagtggagagtggcacaatgtaatttctatgtttcccttc |
404 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52941111 |
caacaaaacctatgaatatggtgaagttttatttaccaacaaactttggaagtggagagtggcacaatgtaatatctatgtttcccttc |
52941023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University