View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_59 (Length: 398)
Name: NF1511_low_59
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 2630884 - 2631239
Alignment:
| Q |
17 |
aacaagaattaacaaagacactcaaaagcatcgaaggcaaagacaccaaaatgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630884 |
aacaagaattaacaaagacactcaaaagcatcgaagacaaagacaccgaagtgctaaccacgattttggcagcacttcgcccatcaaatttgagtcaata |
2630983 |
T |
|
| Q |
117 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2630984 |
ttcaaccattcgtttcttaaagatcctttcagagccaaatggataaagctaacattataaatataatgctgaattcgatttgttgattgcatatgacatg |
2631083 |
T |
|
| Q |
217 |
cacctaatcgatctactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
316 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631084 |
catctaatcgatcaactccaaactcccgcgaagttgttatcatgaaactgtttaaatcaaattaacttccatgggcccgtcgacattaatttgcctccag |
2631183 |
T |
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| Q |
317 |
attgtcaaaacgtacttaatgtcattggcattcaaaatagagcttcatatcttctt |
372 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2631184 |
attgtcaaaacgtacttaatggcattggcattcaaaatagagcttcatatcttctt |
2631239 |
T |
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