View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_6 (Length: 758)
Name: NF1511_low_6
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 704; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 9 - 741
Target Start/End: Complemental strand, 5447116 - 5446382
Alignment:
| Q |
9 |
acatcatcacaacgtaattataacaattcttgcattattgcataaccattagtttctctaggatagaaattaagcataaactagac--gagaatttcata |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5447116 |
acatcatcacaacgtaattataacaattcttgcattattgcataaccattagtttctctaggatagaaattaagcataaactagacaagagaatttcata |
5447017 |
T |
|
| Q |
107 |
gacactaattgattaacaaagctcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaactt |
206 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5447016 |
gacactaattgattaacaaagttcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaactt |
5446917 |
T |
|
| Q |
207 |
catactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctgtcaaaccattctatactttcctccactaccttctca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5446916 |
catactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctttcaaaccattctatactttcctccactaccttctca |
5446817 |
T |
|
| Q |
307 |
agtttcttcactctctccctcgtttcataaacataattctcaaacaagttcttcgctttcaccttcttcctaacctcctcatcctctgccttataccgct |
406 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446816 |
agtttcttcactctctccctcatttcataaacataattctcaaacaagttctttgctttcaccttcttcctaacctcctcatcctctgccttataccgct |
5446717 |
T |
|
| Q |
407 |
cggcatccctcatcattcttctcatctcttcaggactcaaccttccctccttgttggtgatagtgatcttctgtttcaaccctattgtcttatcttcagc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446716 |
cggcatccctcatcattcttctcatctcttcaggactcaaccttccctccttgttggtgatagtgatcttctgtttcaaccctattgtcttatcttcagc |
5446617 |
T |
|
| Q |
507 |
agtaacctccaaaattccattaacatcaacatcaaaacaaacattgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttacca |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446616 |
agtaacctccaaaattccattaacatcaacatcaaaacaaacattgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttacca |
5446517 |
T |
|
| Q |
607 |
agcaaaaagttgtcctcagtcttagcatgttctccttcatacactttgatcaaaagactatcttgattatcacaggctatagagaatacattctcctttt |
706 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5446516 |
agcaaaaagttgtcctcagtcttagcatgttctccttcatacactttgatcaaaagactatcttgattatcacaggctatagagaatacattttcctttt |
5446417 |
T |
|
| Q |
707 |
tcgtagggatcatagtattctttggaatcaaaaca |
741 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
5446416 |
tcgtagggatcatagtattctttggaatcaaaaca |
5446382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 549 - 741
Target Start/End: Original strand, 5432810 - 5432999
Alignment:
| Q |
549 |
attgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtcttagcatgttctccttcatac |
648 |
Q |
| |
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||||||||||||||||||||| ||| || |||| ||| ||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
5432810 |
attgatatttggaacctttctaggtgctggagagattccagagagttcaaatttcccaagcaaaaagttatcct-agtcttagcatgttctccttcatac |
5432908 |
T |
|
| Q |
649 |
actttgatcaaaagactatcttgattatcacaggctatagagaatacattctcctttttcgtagggatcatagtattctttggaatcaaaaca |
741 |
Q |
| |
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|||| ||||||| ||||| |||||||||| || || ||| ||| ||| | | ||||| || ||||||| || |||||| ||||||||||| |
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| T |
5432909 |
actt--atcaaaacactattttgattatcagagactgtagcgaaaacacttttttttttggtcgggatcaatgtgttctttcgaatcaaaaca |
5432999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 530 - 630
Target Start/End: Original strand, 5432239 - 5432339
Alignment:
| Q |
530 |
catcaacatcaaaacaaacattgatatttggaacctttcttggtactaaagagcatcctgagagctcaaatttaccaagcaaaaagttgtcctcagtctt |
629 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |||||||||||||||||||||||||||| || |||||||| |
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| T |
5432239 |
catcaacatcaaaacaaacattgatatttggaacctttctaggtgttgaagagaatccatagagctcaaatttaccaagcaaaaagttatcatcagtctt |
5432338 |
T |
|
| Q |
630 |
a |
630 |
Q |
| |
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| |
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|
| T |
5432339 |
a |
5432339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 5431986 - 5432040
Alignment:
| Q |
102 |
tcatagacactaattgattaacaaagctcaaacaattttacattgcttcacactc |
156 |
Q |
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||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| |
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| T |
5431986 |
tcatagacactaattgagtaatgaagctcaaactattttacattgcttcagactc |
5432040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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