View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_60 (Length: 396)
Name: NF1511_low_60
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 47304080 - 47304453
Alignment:
| Q |
8 |
gacatcatcatctctcaaaaccccaatatctccgctcgtatctacctccccaaaaaccccaccacaaaactccccatcttagtcttcttccatggcggtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304080 |
gacatcatcatctctcaaaaccccaatatctccgctcgtatctacctccccaaaaaccccaccacaaaactccccatcttagtcttcttccatggcggtg |
47304179 |
T |
|
| Q |
108 |
gtttcttcttcgaatccgctttctccaacgtgcaccacgaacacttcaacatcttcgttccactagcaaattcaatagttgtttctgttgaatacagact |
207 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304180 |
gtttcttcttcgagtccgctttctccaaagtgcaccacgaacacttcaacatcttcattccactagcaaattcaatagttgtttctgttgaatacagact |
47304279 |
T |
|
| Q |
208 |
cgctccagaacaccctctacctgcttgttataatgactgttggaattcactccaatgggttgcttctaattctgcgaaaaacccagttaacccggaaccg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304280 |
cgctccagaacaccctctacctgcttgttataatgactgttggaattcactccaatgggttgcttctaattctgcgaaaaacccagttaacccggaaccg |
47304379 |
T |
|
| Q |
308 |
tggttaattaaccatggtgatttcaacagagttttcattggtggtgctagtgctggtggtaacatagttcataa |
381 |
Q |
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| T |
47304380 |
tggttaattaaccatggtgatttcaacagagttttcattggtggtgctagtgctggtggtaacatagttcataa |
47304453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 47301182 - 47301555
Alignment:
| Q |
8 |
gacatcatcatctctcaaaaccccaatatctccgctcgtatctacctccccaaaaaccccaccacaaaactccccatcttagtcttcttccatggcggtg |
107 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
47301182 |
gacatcatcatctctcaaaaccccaacatctctgctcgtatctacctccccaaaaaccccactacaaaacttcccatcttggtcttcttccatggcggtg |
47301281 |
T |
|
| Q |
108 |
gtttcttcttcgaatccgctttctccaacgtgcaccacgaacacttcaacatcttcgttccactagcaaattcaatagttgtttctgttgaatacagact |
207 |
Q |
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|||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47301282 |
gtttcttctttgaatccgctttctccaaactctaccacgaacacttcaacgtcttcgttccgcaagcaaattcaatagttgtttctgttgaatacagact |
47301381 |
T |
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| Q |
208 |
cgctccagaacaccctctacctgcttgttataatgactgttggaattcactccaatgggttgcttctaattctgcgaaaaacccagttaacccggaaccg |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||| | |
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| T |
47301382 |
tgctccagaacaccctctacctgcttgttataatgattgttggaactcactccaatgggttgcttccaattctgccccaaaccccgttaacccggaatca |
47301481 |
T |
|
| Q |
308 |
tggttaattaaccatggtgatttcaacagagttttcattggtggtgctagtgctggtggtaacatagttcataa |
381 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
47301482 |
tggttaattaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataa |
47301555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 47332915 - 47332962
Alignment:
| Q |
185 |
gttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
232 |
Q |
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||||||||||||||||| ||||| || |||||||||||||| |||||| |
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| T |
47332915 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
47332962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 81 - 381
Target Start/End: Original strand, 17841392 - 17841692
Alignment:
| Q |
81 |
ccatcttagtcttcttccatggcggtggtttcttcttcgaatccgctttctccaacgtgcaccacgaacacttcaacatcttcgttccactagcaaattc |
180 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||| |||||||||||||||| ||||| |
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| T |
17841392 |
ccatcttggtcttcttccatggcggtggtttcttctttgaatccgctttctccaaaatccaccacgaacactgcaatgtcttcgttccactagcgaattc |
17841491 |
T |
|
| Q |
181 |
aatagttgtttctgttgaatacagactcgctccagaacaccctctacctgcttgttataatgactgttggaattcactccaatgggttgcttctaattct |
280 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |
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| T |
17841492 |
cattgttgtttctgttgaatacagactcgctccagaacaccctctacctgcttgttatgatgactgttggaattcacttcaatgggttgcttccaattct |
17841591 |
T |
|
| Q |
281 |
gcgaaaaacccagttaacccggaaccgtggttaattaaccatggtgatttcaacagagttttcattggtggtgctagtgctggtggtaacatagttcata |
380 |
Q |
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|| |||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
17841592 |
gcaaaaaacccggtcaatgctgaaccgtggttaattaaccatggtgatttcaacagagttttcattggtggtcctagttctggtggtaacatagttcata |
17841691 |
T |
|
| Q |
381 |
a |
381 |
Q |
| |
|
| |
|
|
| T |
17841692 |
a |
17841692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 17841313 - 17841359
Alignment:
| Q |
11 |
atcatcatctctcaaaaccccaatatctccgctcgtatctacctccc |
57 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
17841313 |
atcatcatctctcaaaaccccaacatctccgctcgtatctatctccc |
17841359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 673167 - 673216
Alignment:
| Q |
320 |
catggtgatttcaacagagttttcattggtggtgctagtgctggtggtaa |
369 |
Q |
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|||||| ||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
673167 |
catggtaatttcaatagagttttcattggtggtgatagtagtggtggtaa |
673216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 12493146 - 12493093
Alignment:
| Q |
172 |
agcaaattcaatagttgtttctgttgaatacagactcgctccagaacaccctct |
225 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||| ||| |||||||||||| |
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|
| T |
12493146 |
agcaaattacatagttgtttatgttgaatacatactctctctagaacaccctct |
12493093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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