View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_61 (Length: 395)
Name: NF1511_low_61
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 38345552 - 38345182
Alignment:
| Q |
11 |
cgaagaaaatgcaatgagtaagcggtaattttggtccctaaatatgtgaaggggtatctctatagttccttaatgtatctctaaaa-gtgtaagaatact |
109 |
Q |
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| T |
38345552 |
cgaagaaaatgccatgagtaagcggtaattttggtccctaaatatgtgaaggggtatctctatagttccttaatgtatctctaaaaagtgtaggaatact |
38345453 |
T |
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| Q |
110 |
gaacattccatttattaaagagcattttaagttgaattttgagattttgattacctgtatggaacctgcagtgcaaatctgaagccagatttttcatata |
209 |
Q |
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| T |
38345452 |
gaacattccatttattaaagagcattttaagttgaattttgagattttgattacctgtatggaacctgcagtgcaaatctgaagccagatttttcatatt |
38345353 |
T |
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| Q |
210 |
gtgatgcataagctgtcaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccatgatttcttgatcatcacctgctaccgg |
309 |
Q |
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| T |
38345352 |
gtgatgcataagctgtcaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccattatttcttgatcatcacctgctaccgg |
38345253 |
T |
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| Q |
310 |
cacctcacttttagaaaagagtgtatatatgttccttattactgacttaacatcaaatcggccaaaatctg |
380 |
Q |
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| T |
38345252 |
cacctcacttttagaaaagagtgtatatatgttccttattactgacttaacatcaaatcggccaaaatctg |
38345182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 90 - 380
Target Start/End: Complemental strand, 38350786 - 38350496
Alignment:
| Q |
90 |
tctaaaagtgtaagaatactgaacattccatttattaaagagcattttaagttgaattttgagattttgattacctgtatggaacctgcagtgcaaatct |
189 |
Q |
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| T |
38350786 |
tctagaagtgtaagaatattgaacattccatttgttaaagagcattttaagttgaattttgagactttgattacctgtatggaacctgcaatgcaaatct |
38350687 |
T |
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| Q |
190 |
gaagccagatttttcatatagtgatgcataagctgtcaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccatgatttct |
289 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38350686 |
gaagccagatttttcatacagtgatgcataagctgttaagtcttcctcagagaaccatggtgggaggggagtagatgggttaaacaagtccattatttct |
38350587 |
T |
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| Q |
290 |
tgatcatcacctgctaccggcacctcacttttagaaaagagtgtatatatgttccttattactgacttaacatcaaatcggccaaaatctg |
380 |
Q |
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| T |
38350586 |
tgatcatcacttgctactggcacctcagttttagaaaagagtatatagatgttccttataactgatttgacatcaaagcggccgaaatctg |
38350496 |
T |
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