View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_63 (Length: 393)
Name: NF1511_low_63
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 379
Target Start/End: Original strand, 38321050 - 38321413
Alignment:
| Q |
12 |
tatactatatatgtaaattgaaatcatatgattgcatgcatgatttcatgtttggttttttctttgttttacagtaagaaggctattaagagagcaaggt |
111 |
Q |
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| T |
38321050 |
tatactatatatgtaaattgaaatcatatgattgcatgcatgatttcatgtttggtttttt--ttgttttacagtaagaaggctattaagagagcaaggt |
38321147 |
T |
|
| Q |
112 |
acagaatcaagcttctcaagaacaagaaagatgcaatagtgaggcaattaagaaaagatttggttgagctaatacaaggtggttatgaagaagctgctct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321148 |
acagaatcaagcttctcaagaacaagaaagatgcaatagttaggcaattaagaaaagatttggttgagctaatacaaggtggttatgaagaagctgctct |
38321247 |
T |
|
| Q |
212 |
aaatcgggtaatttgttaataataacattaacctagtaataatattactannnnnnnnatttgttgtaacttgaaagtaatctcattcttttattttgct |
311 |
Q |
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||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321248 |
aaaccgggtaatttgttaataataacatt-tcatagtaataatattacta-tttttttatttgttgtaacttgaaagtaatctcattcttttattttgct |
38321345 |
T |
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| Q |
312 |
ttcatagtatatcatgtatgttctttctagcattactgctagaacaacagtttggttcagaagaaaac |
379 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38321346 |
ttcatagtatatcatgtatgttctttctaccattactgctagaacaacagtttggttcagaagaaaac |
38321413 |
T |
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