View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_67 (Length: 377)
Name: NF1511_low_67
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 47 - 361
Target Start/End: Complemental strand, 44289819 - 44289505
Alignment:
| Q |
47 |
cttacagataagagtatcagagtgtctaccaccggcatatataagaagaagacggcggggtgtaggcggagaagcggtggtggcttcaacctcctgcatg |
146 |
Q |
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| T |
44289819 |
cttacagataagagcaacagagtggctaccaccagcagatataagaagaacacggcggggtggaggcggagaagcggtggtggcttcaacctcctgcatg |
44289720 |
T |
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| Q |
147 |
attgtcctttacagtaaacagtttcacacttcaaaaacagtctgtctctctctatctatacaatcaggtggtgatgttgttgagagttgagactggagat |
246 |
Q |
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| T |
44289719 |
attgtcctttacagtaaacagtttcacacttcaaaaacagtctgtctctctctatctatacaatcaggtggtgatgttgttgagagttgagacttgagat |
44289620 |
T |
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| Q |
247 |
agtgaattattattatgaattatgatgtcagagagatacagagagaacagtaatgggaaaaaagacaagaagagtttgggaaagatagatttagatgttg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44289619 |
agtgaattattattatgaattatgatgtcagagagatacagagagaacagtaatgggaaaaaagacaagaagagtttgggaaagatagatttagatgttg |
44289520 |
T |
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| Q |
347 |
acaggtggaaggaag |
361 |
Q |
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||||||||||||||| |
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| T |
44289519 |
acaggtggaaggaag |
44289505 |
T |
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