View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_68 (Length: 374)
Name: NF1511_low_68
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 21994867 - 21995209
Alignment:
| Q |
8 |
cgaagaaaatctgaaatcttttctaaatttaannnnnnngaataagaacaaaatccactatctccaccacattcgctttttctctctgctcacccttgcc |
107 |
Q |
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| T |
21994867 |
cgaaaaaaatctgaaatcttttctaaatttaatttttttgaataagaacaaaatccactatctccaccag-ttctctttttctctctgctcacccttggc |
21994965 |
T |
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| Q |
108 |
gctacttctgcattgtctcatcttttgtccttgacgtacgcctctcatccgcatccattatatttttcatgtgttgttgatgctactgcgctcattctct |
207 |
Q |
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| T |
21994966 |
gctacttctgcattgtctcatcttttgtccttgacgtacgcctgtcatccgcatccagtatatttttcatgtgttgttgatgctactgcgctcattctct |
21995065 |
T |
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| Q |
208 |
ttctctggtttcaattttcaaattttgttctttagatctgagccaagaagaaaagagtttatcttatttttgtgatcaagaaaagaatgagaaattgaaa |
307 |
Q |
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| T |
21995066 |
ttttctggtttcaattttcaaattttgttcttcagatctgagccaagaagaaaagagtttatctgatttttgtgataaagaaaagaatgataaattgaaa |
21995165 |
T |
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| Q |
308 |
tgaatgaggaaagggatagagcgggttctaattttgtaagagac |
351 |
Q |
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| T |
21995166 |
tgaatgaggaaagggatagagcgggttctaattttgtaagagac |
21995209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 21994206 - 21994263
Alignment:
| Q |
150 |
tctcatccgcatccattatatttttcatgtgttgttgatgctactgcgctcattctct |
207 |
Q |
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| T |
21994206 |
tctcctccacatccattatattgttcatgtgttcttgctgctactgcacttattctct |
21994263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 18416203 - 18416169
Alignment:
| Q |
5 |
tgtcgaagaaaatctgaaatcttttctaaatttaa |
39 |
Q |
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| T |
18416203 |
tgtcgaaaaaaatctgaaatcttttctaaatttaa |
18416169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 18250416 - 18250384
Alignment:
| Q |
7 |
tcgaagaaaatctgaaatcttttctaaatttaa |
39 |
Q |
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| T |
18250416 |
tcgaaaaaaatctgaaatcttttctaaatttaa |
18250384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 12322350 - 12322318
Alignment:
| Q |
7 |
tcgaagaaaatctgaaatcttttctaaatttaa |
39 |
Q |
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| T |
12322350 |
tcgaaaaaaatctgaaatcttttctaaatttaa |
12322318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 2274025 - 2274057
Alignment:
| Q |
7 |
tcgaagaaaatctgaaatcttttctaaatttaa |
39 |
Q |
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| T |
2274025 |
tcgaaaaaaatctgaaatcttttctaaatttaa |
2274057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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