View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_70 (Length: 370)
Name: NF1511_low_70
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 48 - 329
Target Start/End: Original strand, 10859937 - 10860215
Alignment:
| Q |
48 |
tattataagatgtagaacttatattctttttataatttgac-aggtgaggtccaactccaatgccgcagcaaaataactggaaaatgaggttgatggtaa |
146 |
Q |
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| T |
10859937 |
tattataagttgtaaaacttacattctttttataatttgactaggtgaggtccaacttcaatactgcagcaaaatgactggaaaatgaggttgatggtaa |
10860036 |
T |
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| Q |
147 |
agacagttgatgaagaggaacgaagttgtccagtggtcatactttttacttgattatatttggatttattattccagtgttactatgttttgtatttaag |
246 |
Q |
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| T |
10860037 |
agacagttgatgaagaggaatgaagttgtccattggtcatactttttacgttattatatttggat---ttattccagtgttactatgttgtgcgtttaag |
10860133 |
T |
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| Q |
247 |
aaaaataagtacggttgtgtggtttaagttacaataagctgattgttctacatattaatgtaacaatgtgtgttattgtatgc |
329 |
Q |
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| T |
10860134 |
-aaattaagtacggttgtgtggtttaagttacaataagttgattgttctatatattaatgtaacaatgtgtgtgattgtatgc |
10860215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 10905251 - 10905328
Alignment:
| Q |
263 |
gtgtggtttaagttacaataagctgattgttctacatattaatgtaacaatgtgtgttattgtatgcaagtttattgg |
340 |
Q |
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| T |
10905251 |
gtgtggtttaagttacaagaagttgattgttttatatattattgtaacaatgtgtgtgattgcatgcaagtttattgg |
10905328 |
T |
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