View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_74 (Length: 361)
Name: NF1511_low_74
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 41 - 344
Target Start/End: Complemental strand, 29585584 - 29585284
Alignment:
| Q |
41 |
acaaacccatcaaaatatat-aagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc |
139 |
Q |
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| T |
29585584 |
acaaacccatcaaaatatatcaagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc |
29585485 |
T |
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| Q |
140 |
tacatacatacataagtcaaaaaagtcaggagaaaactacgcaaacttgcgtttttgaagaaagtgcaacatcactctcaaatctcaatggttgattcca |
239 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29585484 |
tacatacata----agtcaaaaaagtcaggagaaaactacgcaaacttgcgtttttgaagaaagtgcaacatcactctcaaatctcaatggttgattcca |
29585389 |
T |
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| Q |
240 |
ctcctccaacttcaactatttcttctaatggcaccgccatttcttcttgtttccgacgaacggttgtttactcactttccccttcacttcactctcaccc |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29585388 |
ctcctccaacttcaactatttcttctaatggcaccgccacttcttcttgtttccgacgaacggttgcttactcactttccccttcacttcactctcaccc |
29585289 |
T |
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| Q |
340 |
ttctt |
344 |
Q |
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||||| |
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| T |
29585288 |
ttctt |
29585284 |
T |
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