View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_77 (Length: 355)
Name: NF1511_low_77
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 42631704 - 42631374
Alignment:
| Q |
11 |
ttattcttaattacaatcgtggtgatcaagctgctacggttaatgatggaacttatattggttttatggcttttatgtcactagggactgttttgtctct |
110 |
Q |
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| T |
42631704 |
ttattcttaattacaatcgtggtgatcaagctgctacggttaatgatggaacttatattggttttatggcttttatgtcactagggactgttttgtctct |
42631605 |
T |
|
| Q |
111 |
aactattttaccagctagtaaagttgttcgtgatgatggaacaaagtgtacaaatatgttgtactcaaatgttgcaactgagtgtgtggagattcttaaa |
210 |
Q |
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| T |
42631604 |
aactattttaccagctagtaaagttgttcgtgatgatggaacaaagtgtacaaatatgttgtactcaaatgttgcaactgagtgtgtggagattcttaaa |
42631505 |
T |
|
| Q |
211 |
ttgttctataattggaagatgcttctcatgattcctgctgcttggtctagtaannnnnnnnacacatatcaatttaatcatgttaataagacacagttta |
310 |
Q |
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| T |
42631504 |
ttgttctataattggaagatgcttctcatgattcctgctgcttggtctagtaattttttttacacatatcaatttaatcatgttaataagacacagttta |
42631405 |
T |
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| Q |
311 |
gtttgagaacaagagggttgaacaatgtgtt |
341 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42631404 |
gtttgagaacaagagggttgaacaatgtgtt |
42631374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 42638848 - 42638518
Alignment:
| Q |
11 |
ttattcttaattacaatcgtggtgatcaagctgctacggttaatgatggaacttatattggttttatggcttttatgtcactagggactgttttgtctct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42638848 |
ttattcttaattacaatcgtggtgatcaagctgctacggttaacgatggcacttatattggttttatggcttttatgtcactagggactgttttgtctct |
42638749 |
T |
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| Q |
111 |
aactattttaccagctagtaaagttgttcgtgatgatggaacaaagtgtacaaatatgttgtactcaaatgttgcaactgagtgtgtggagattcttaaa |
210 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
42638748 |
gacaattttaccagccagtaaagttgttcgtgatgatggaacaaagtgtacaaatatgttgtactcaaatgttgcaaccgagtgtgtggagattctcaaa |
42638649 |
T |
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| Q |
211 |
ttgttctataattggaagatgcttctcatgattcctgctgcttggtctagtaannnnnnnnacacatatcaatttaatcatgttaataagacacagttta |
310 |
Q |
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||||||| ||||||| ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42638648 |
ctgttctacaattggaggatgcttcttataattcctgctgcttggtctagtaattttttttacacatatcaatttaatcatgttaataagacacagttta |
42638549 |
T |
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| Q |
311 |
gtttgagaacaagagggttgaacaatgtgtt |
341 |
Q |
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| T |
42638548 |
gtttgagaacaagagggttgaacaatgtgtt |
42638518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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