View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_78 (Length: 354)

Name: NF1511_low_78
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_78
NF1511_low_78
[»] chr5 (1 HSPs)
chr5 (14-312)||(1671871-1672169)
[»] chr8 (4 HSPs)
chr8 (220-312)||(27475502-27475594)
chr8 (87-164)||(27475348-27475425)
chr8 (15-68)||(16398803-16398856)
chr8 (244-336)||(16398964-16399058)
[»] chr3 (2 HSPs)
chr3 (88-144)||(5564735-5564791)
chr3 (189-292)||(5564841-5564947)
[»] chr7 (2 HSPs)
chr7 (92-163)||(13601063-13601134)
chr7 (90-142)||(40966225-40966276)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 1672169 - 1671871
Alignment:
Q  14 ataattctcattgcaagtatgaattaattggcagcataataatccaatcatgttgacagagacaccgccacatcggtgtaatcctttatattccaaatat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1672169 ataattctcattgcaagtatgaattaattggcagcataataatccaatcatgttgacacagacaccgccacatcggtgtaatcctttatattccaaatat 1672070  T
Q  114 ctattacatctcaaattgcaatctaacttacagagtcgtatatgctcattccnnnnnnnnnnnnntacttacagataaatgcttatttatactaaacaaa 213  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||||||||||||    
T  1672069 ctattacatcttaaattgcaatctaacttacagagtcgtatatgctcattccaaaaaataaaaaatacttacaggtaaatgcttatttatactaaacaaa 1671970  T
Q  214 taatcgtatatacatatatcatgagtttttataaaataccggatgatatttcgcaactatatttttaataaaaagtgcatataatgtttagaattatat 312  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  1671969 taatcgtatatacatatatcatgagtttttattaaagaccggatgatatttcgcagctatatttttaataaaaagtgcatgtaatgtttagaactatat 1671871  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 27475502 - 27475594
Alignment:
Q  220 tatatacatatatcatgagtttttataaaataccggatgatatttcgcaactatatttttaataaaaagtgcatataatgtttagaattatat 312  Q
    |||||| ||||| ||||||||||||||||| |||  |||||||||| || |||||||||||||||||||||||  ||||||||||||||||||    
T  27475502 tatatatatataacatgagtttttataaaagaccacatgatatttcacacctatatttttaataaaaagtgcaggtaatgtttagaattatat 27475594  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 27475348 - 27475425
Alignment:
Q  87 cggtgtaatcctttatattccaaatatctattacatctcaaattgcaatctaacttacagagtcgtatatgctcattc 164  Q
    |||||||||||||||||||  || ||||||||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  27475348 cggtgtaatcctttatattttaagtatctattatatctcaaattgcaatctaacttacagagtcatatttgctcattc 27475425  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 16398803 - 16398856
Alignment:
Q  15 taattctcattgcaagtatgaattaattggcagcataataatccaatcatgttg 68  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  16398803 taattctcactccaagtatgaattaattggcagcataataatccaatcatgttg 16398856  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 16398964 - 16399058
Alignment:
Q  244 ataaaataccggatgatatttcgcaactata-tttttaataaaaagtgcatataatgtttagaattatatg-ccgcacgggtaaaaagtctagtt 336  Q
    |||||| ||||||| |||||||||| ||||| |||||||||||||  | |  |||||||||||| |||||  |||||||||| ||||||||||||    
T  16398964 ataaaagaccggattatatttcgcacctatagtttttaataaaaaaggtaggtaatgtttagaactatatatccgcacgggtgaaaagtctagtt 16399058  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 5564735 - 5564791
Alignment:
Q  88 ggtgtaatcctttatattccaaatatctattacatctcaaattgcaatctaacttac 144  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||    
T  5564735 ggtgtaatcctttatatttcaagtatctattatatctcaaattgcaatcaaacttac 5564791  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 292
Target Start/End: Original strand, 5564841 - 5564947
Alignment:
Q  189 taaatgcttatttatactaaacaaataatcg--tatatacatatatcatgagtttt-tataaaataccggatgatatttcgcaactata-tttttaataa 284  Q
    |||| ||||||||||||||||||| | ||||  |||||||||||| |||||||||| || | ||  ||  ||||||||||||| ||||| ||||||||||    
T  5564841 taaaagcttatttatactaaacaagttatcgtatatatacatataacatgagttttgtagacaa-gccttatgatatttcgcacctatattttttaataa 5564939  T
Q  285 aaagtgca 292  Q
    ||||||||    
T  5564940 aaagtgca 5564947  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 13601134 - 13601063
Alignment:
Q  92 taatcctttatattccaaatatctattacatctcaaattgcaatctaacttacagagtcgtatatgctcatt 163  Q
    |||||||||||||||||| |||  |||| ||||||||||||||||||| || | |||||  |||||||||||    
T  13601134 taatcctttatattccaattatgcattatatctcaaattgcaatctaagtttcggagtcacatatgctcatt 13601063  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 40966225 - 40966276
Alignment:
Q  90 tgtaatcctttatattccaaatatctattacatctcaaattgcaatctaactt 142  Q
    |||||||||| ||||||||| ||| ||||| ||||||| ||||||||||||||    
T  40966225 tgtaatccttcatattccaagtatgtattatatctcaa-ttgcaatctaactt 40966276  T

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