View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_83 (Length: 344)
Name: NF1511_low_83
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_83 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 25802544 - 25802859
Alignment:
| Q |
19 |
atgggacatggtaaaggaagtagcaggaaacttgacgccactattcctagtttacagaatacattgtacgctgcacataattgcagaggaagtagaggaa |
118 |
Q |
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| T |
25802544 |
atgggacatggtaaaggaagtagcaggaaacttgaggccactattcctagtttacagaatacattgtacgctgcacataattgcagaggaagtagaggaa |
25802643 |
T |
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| Q |
119 |
gtaaaggaaagaaggtgaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttcagctgttttgggtgatcctacgactctcattgctgg |
218 |
Q |
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| T |
25802644 |
gtaaaggaaagaaggtgaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttcagcggttttgggtgatcctacgactctcattgctgg |
25802743 |
T |
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| Q |
219 |
tgttgttggggcactcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtcttttgttgtgacgtgtatgttagttttgtttagta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802744 |
tgttgttggggcactcatgtctagggcttgaatatcatggaatataacagaatctatcttttgtcttttgttgtgacgtgtatgttagttttgtttagta |
25802843 |
T |
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| Q |
319 |
ccacatgatgatgatg |
334 |
Q |
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| T |
25802844 |
ccacatgatgatgatg |
25802859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 86 - 334
Target Start/End: Complemental strand, 105845 - 105595
Alignment:
| Q |
86 |
acgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaa--gtgttgtgagattgctggatttgcggtgcagattgtgatttca |
183 |
Q |
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| T |
105845 |
acgctgcacataattgcagaggaagtagaggaagtaaaggaaagaaggtgaaaaaaagtgttgtgagattgctggatttgcggtgcagattgtgatttca |
105746 |
T |
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| Q |
184 |
gctgttttgggtgatcctacgactctcattgctggtgttgttggggcactcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtc |
283 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105745 |
gcggttttgggtgatcctacgactctcattgctggtgttgttggggcgctcatgtctagggcttgaatatcatggaacataacagaatctatcttttgtc |
105646 |
T |
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| Q |
284 |
ttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
334 |
Q |
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| T |
105645 |
ttttgttgtgacgtgtatgttagttttgtttagtaccacatgatgatgatg |
105595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 108692 - 108620
Alignment:
| Q |
19 |
atgggacatggtaaaggaagtagcaggaaacttgacgccactattcctagtttacagaatacattgtacgctg |
91 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
108692 |
atgggacatggtaaaggaagtagcaggaaacttgaggccattattcctagtttacagaatacattgtacgctg |
108620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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