View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_85 (Length: 342)

Name: NF1511_low_85
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_85
NF1511_low_85
[»] chr1 (11 HSPs)
chr1 (1-324)||(6521636-6521959)
chr1 (128-324)||(6506903-6507099)
chr1 (5-324)||(6512681-6513000)
chr1 (145-324)||(6517220-6517399)
chr1 (120-237)||(47778041-47778158)
chr1 (1-58)||(6517076-6517133)
chr1 (120-217)||(47788183-47788280)
chr1 (152-324)||(47760133-47760299)
chr1 (124-217)||(47781969-47782062)
chr1 (152-229)||(6523733-6523810)
chr1 (1-40)||(6506770-6506809)
[»] scaffold0341 (4 HSPs)
scaffold0341 (128-324)||(928-1124)
scaffold0341 (128-324)||(8581-8778)
scaffold0341 (1-40)||(795-834)
scaffold0341 (1-40)||(8448-8487)
[»] chr7 (1 HSPs)
chr7 (176-321)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (203-323)||(28856512-28856632)
chr5 (205-255)||(28831318-28831368)
chr5 (203-323)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 6521959 - 6521636
Alignment:
Q  1 tcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacctcatttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  6521959 tcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgtt 6521860  T
Q  101 gcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6521859 gcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtacc 6521760  T
Q  201 atccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521759 atccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctaca 6521660  T
Q  301 tagtccaatcgcgtttactttgtc 324  Q
    ||||||||||||||||||||||||    
T  6521659 tagtccaatcgcgtttactttgtc 6521636  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 128 - 324
Target Start/End: Original strand, 6506903 - 6507099
Alignment:
Q  128 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 227  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 6507002  T
Q  228 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 324  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  6507003 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 6507099  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 6512681 - 6513000
Alignment:
Q  5 acagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacctcatttgttgcgt 104  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||         ||||  ||||| | ||| ||| | |||||||| || |    
T  6512681 acagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcat 6512780  T
Q  105 tgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatcc 204  Q
    ||||   | ||||  | ||||||  ||||| | |||| || ||||| ||||||||||||| |||||| ||||||||||||   || || |  ||||| ||    
T  6512781 tgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaacc 6512880  T
Q  205 aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagt 304  Q
    ||| || |||||||| ||||||||| ||||||||||||  |||| |||||| || | ||||||||||||||||||| ||||||||||||||||||| |||    
T  6512881 aatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagt 6512980  T
Q  305 ccaatcgcgtttactttgtc 324  Q
    ||||| ||||||||||||||    
T  6512981 ccaatagcgtttactttgtc 6513000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 324
Target Start/End: Original strand, 6517220 - 6517399
Alignment:
Q  145 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaaga 244  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| |||||||||| |||||  ||||||||| ||||||||||||      
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaac 6517319  T
Q  245 acagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 324  Q
    ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| ||||||||||| ||||||||||||||    
T  6517320 acagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtc 6517399  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 47778158 - 47778041
Alignment:
Q  120 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcg 219  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| ||||||||||| |||      
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttccttttt 47778059  T
Q  220 gttttgacaatgttgtgt 237  Q
    |||| ||||| |||||||    
T  47778058 gtttggacaaagttgtgt 47778041  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6517076 - 6517133
Alignment:
Q  1 tcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 58  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517076 tcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 47788280 - 47788183
Alignment:
Q  120 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 217  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt 47788183  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 324
Target Start/End: Original strand, 47760133 - 47760299
Alignment:
Q  152 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg 251  Q
    |||||||| ||||||||||| ||||||||||| |  ||||      |||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  252 aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 324  Q
    |||  ||||| ||| |  | ||| | | | |||| |||||||||||||| |||||||| ||||||||||||||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtc 47760299  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 47782062 - 47781969
Alignment:
Q  124 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 217  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt 47781969  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 6523810 - 6523733
Alignment:
Q  152 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaa 229  Q
    ||||| ||||||| ||| || ||||||||||||| |||||| |  ||||| ||||||||||||||| ||||| |||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaa 6523733  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6506770 - 6506809
Alignment:
Q  1 tcctacagcatatttaaggtcactgtcccctgatgcagct 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  6506770 tcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 128 - 324
Target Start/End: Original strand, 928 - 1124
Alignment:
Q  128 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 227  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 1027  T
Q  228 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 324  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  1028 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 1124  T

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Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 128 - 324
Target Start/End: Original strand, 8581 - 8778
Alignment:
Q  128 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgg-ttttga 226  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttga 8680  T
Q  227 caatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 324  Q
    ||| |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  8681 caaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 795 - 834
Alignment:
Q  1 tcctacagcatatttaaggtcactgtcccctgatgcagct 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  795 tcctacagcatatttaaggtcactttcccccgatgcagct 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8448 - 8487
Alignment:
Q  1 tcctacagcatatttaaggtcactgtcccctgatgcagct 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  8448 tcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 176 - 321
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  176 aacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaat 275  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||   |||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat 722207  T
Q  276 cattgagtttgacatctcctctacatagtccaatcgcgtttacttt 321  Q
    ||||||| || |||||||||||||||||||||| | ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 323
Target Start/End: Original strand, 28856512 - 28856632
Alignment:
Q  203 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 302  Q
    |||||||||||||||  |||| |||||| |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28856512 ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28856611  T
Q  303 gtccaatcgcgtttactttgt 323  Q
     ||| || |||| ||||||||    
T  28856612 atcctatggcgtatactttgt 28856632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 28831318 - 28831368
Alignment:
Q  205 aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatt 255  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |||||||    
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaatt 28831368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 323
Target Start/End: Original strand, 28861789 - 28861909
Alignment:
Q  203 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 302  Q
    ||||||||||||||| ||||  |||| | |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28861789 ccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28861888  T
Q  303 gtccaatcgcgtttactttgt 323  Q
     ||| || |||| ||||||||    
T  28861889 atcctatggcgtatactttgt 28861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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