View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_86 (Length: 341)

Name: NF1511_low_86
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_86
NF1511_low_86
[»] chr2 (3 HSPs)
chr2 (1-71)||(9623080-9623150)
chr2 (82-168)||(9621493-9621581)
chr2 (273-327)||(9621439-9621493)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9623150 - 9623080
Alignment:
Q  1 atagtatacatacaaggaacatgtgtacaagactacatgtggattatacatacaaagaaaagtaaacgaat 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9623150 atagtatacatacaaggaacatgtgtacaagactacatgtggattatacatacaaagaaaagtaaacgaat 9623080  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 9621581 - 9621493
Alignment:
Q  82 ggttgagaacacattacaaaagctcaccttgttcat--cacttgtgcatcttcatgttgaggctcaacatgaaagagaatcatgcattc 168  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9621581 ggttgagaacacattacaaaacctcaccttgttcatatcacttgtgcatcttcatgttgaggctcaacataaaagagaatcatgcattc 9621493  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 9621493 - 9621439
Alignment:
Q  273 caaatttatcgccacagatggtttcactgctaaggtataaagacccttgtatctg 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9621493 caaatttatcgccacagatggtttcactgctaaggtataaagacccttgtatctg 9621439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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