View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_87 (Length: 340)
Name: NF1511_low_87
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 48593751 - 48593937
Alignment:
| Q |
22 |
tcacacacctaaatctccttttatctatcgtttctggctttctatctcatttccatatactcttcttataccacgctggatatatgaaagtgtattttaa |
121 |
Q |
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| T |
48593751 |
tcacacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa |
48593850 |
T |
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| Q |
122 |
ttcctttagcatttaatctgtgtttggataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt |
208 |
Q |
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| T |
48593851 |
ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt |
48593937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 48598362 - 48598548
Alignment:
| Q |
22 |
tcacacacctaaatctccttttatctatcgtttctggctttctatctcatttccatatactcttcttataccacgctggatatatgaaagtgtattttaa |
121 |
Q |
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| T |
48598362 |
tcacacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa |
48598461 |
T |
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| Q |
122 |
ttcctttagcatttaatctgtgtttggataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt |
208 |
Q |
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| T |
48598462 |
ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt |
48598548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 48593931 - 48593971
Alignment:
| Q |
225 |
aagagtttatttggatagagagtttaagaaggtagagttca |
265 |
Q |
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| T |
48593931 |
aagagtttgtttggatagagagtttaagaaggtagagttca |
48593971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 48598542 - 48598582
Alignment:
| Q |
225 |
aagagtttatttggatagagagtttaagaaggtagagttca |
265 |
Q |
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| T |
48598542 |
aagagtttgtttggatagagagtttaagaaggtagagttca |
48598582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 30891154 - 30891122
Alignment:
| Q |
301 |
tttttataaataaattaaatgtgattgaagtat |
333 |
Q |
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| T |
30891154 |
tttttttaaataaattaaatgtgattgaagtat |
30891122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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