View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_88 (Length: 339)
Name: NF1511_low_88
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 48481351 - 48481672
Alignment:
| Q |
13 |
aaaatatgaagtagcacatgggcccggcaagtggctaggagcnnnnnnnnnnngaatatctcaaacaattttaacgaaactcacataacaatctttgcct |
112 |
Q |
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| T |
48481351 |
aaaatatgaagtagcacatgggcccggcaagtggctaggagcaaaaaaaaacagaatatctcaaacaattttaacgaaactcacataacaatctttgcct |
48481450 |
T |
|
| Q |
113 |
tctaaccggtactttgcttccctcagatcagcaacactacgccttaactgttcgccacgatactcaacaacctgcagacaggcacatgaagcatgtacat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48481451 |
tctaaccggtactttgcttccctcagatcagcaacactacgccttaactgttcgccacgatactcaacaacctgcagacaggcacatgaagcatgtacat |
48481550 |
T |
|
| Q |
213 |
ttagtatatcaggggaaactgcagcagtatttattttacacttcagtgaccatcttaagttaatacgaaatgttaccatgtccccttcttgcaaatctct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48481551 |
ttagtatatcaggggaaactgcagcagtatttattttacacttcagtgaccatcttaagttaatacgaaatgttaccatgtccccttcttgcaaatctct |
48481650 |
T |
|
| Q |
313 |
acgagcaaagaggccccaccct |
334 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
48481651 |
acgagcaaagaggccccaccct |
48481672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 10040808 - 10040707
Alignment:
| Q |
91 |
actcacataacaatctttgccttctaaccggtactttgcttccctcagatcagcaacactacgccttaactgttcgccacgatactcaacaacctgcaga |
190 |
Q |
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||||||||| ||||||||||||||| | || || |||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||| || |
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| T |
10040808 |
actcacatagcaatctttgccttctgaacgatattttgcttccctcagatcagccacactacgccttacctgctcacctcgatactcaacaacctgcgga |
10040709 |
T |
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| Q |
191 |
ca |
192 |
Q |
| |
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|| |
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| T |
10040708 |
ca |
10040707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 41525823 - 41525883
Alignment:
| Q |
127 |
tgcttccctcagatcagcaacactacgccttaactgttcgccacgatactcaacaacctgc |
187 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||| |
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| T |
41525823 |
tgcttccctcagatcagcaacactgcgccttacttgttcgccgcgatattcaagaacctgc |
41525883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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