View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_94 (Length: 325)

Name: NF1511_low_94
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_94
NF1511_low_94
[»] chr5 (1 HSPs)
chr5 (17-318)||(28152063-28152361)
[»] chr6 (6 HSPs)
chr6 (201-240)||(12877811-12877850)
chr6 (201-237)||(20759303-20759339)
chr6 (203-240)||(14579001-14579038)
chr6 (201-240)||(2936651-2936690)
chr6 (201-240)||(3836144-3836183)
chr6 (200-238)||(15951541-15951579)
[»] chr4 (7 HSPs)
chr4 (201-240)||(6685778-6685817)
chr4 (201-240)||(31768285-31768324)
chr4 (200-240)||(13250994-13251034)
chr4 (201-240)||(572234-572273)
chr4 (201-240)||(580637-580676)
chr4 (201-240)||(6664424-6664463)
chr4 (201-240)||(6682323-6682362)
[»] chr7 (3 HSPs)
chr7 (201-242)||(38414115-38414156)
chr7 (201-240)||(37006261-37006300)
chr7 (237-310)||(37006353-37006426)
[»] chr1 (2 HSPs)
chr1 (201-238)||(48715079-48715116)
chr1 (200-240)||(27793839-27793879)
[»] chr2 (1 HSPs)
chr2 (204-240)||(80466-80502)
[»] scaffold0321 (1 HSPs)
scaffold0321 (201-240)||(17970-18009)
[»] scaffold0019 (1 HSPs)
scaffold0019 (201-240)||(174071-174110)
[»] chr3 (2 HSPs)
chr3 (201-240)||(6240659-6240698)
chr3 (201-240)||(26361893-26361932)
[»] scaffold0933 (1 HSPs)
scaffold0933 (200-240)||(1586-1626)
[»] chr8 (2 HSPs)
chr8 (201-236)||(29275385-29275420)
chr8 (206-240)||(29260363-29260397)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 28152361 - 28152063
Alignment:
Q  17 agtattgaaggaccatgaatgaagagcaagctagaaaggcaaagaagttgagttgagtgattttgctaagcgaggagatgtgctagcttagcgaatcgag 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28152361 agtattgaaggaccatgaatgaagagcaagctaaaaaggcaaagaagttgagttgagtgattttgctaagcgaggagatgtgctagcttagcgaattgag 28152262  T
Q  117 tcggaaagtgaagtctaccaacaacatgtcaccattcgctgcagcagattataaatcacgtataaaagcatggcaggttcgtgatgttgtaaattttgag 216  Q
    |||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  28152261 tcggaaagtgaagtctaccaaca---tgtcaccattcgctgcagtagattataaatcacgtagaaaagtatggcgggttcgtggtgttgtaaattttgag 28152165  T
Q  217 tatatttcaaaagtttcaaatattatcatatgagtaattattgtgtttgacttgggtttctagatatgcttttaattccaaattgtgttaccacctttgc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  28152164 tatatttcaaaagtttcaaatattatcatatgagtaattattgtgtttgacttgggtttctagacatgcttttaattccaaactgtgttaccacctttgc 28152065  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 12877850 - 12877811
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12877850 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 12877811  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 20759339 - 20759303
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaat 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  20759339 tgttgtaaattttgagtatatttcaaaagtttcaaat 20759303  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 14579001 - 14579038
Alignment:
Q  203 ttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14579001 ttgtaaattttgattatatttcaaaagtttcaaatatt 14579038  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 2936690 - 2936651
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  2936690 tgttgtaaattttgattatatttcaaaaatttcaaatatt 2936651  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 3836183 - 3836144
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  3836183 tgttgtaaattttgaacatatttcaaaagtttcaaatatt 3836144  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 15951541 - 15951579
Alignment:
Q  200 atgttgtaaattttgagtatatttcaaaagtttcaaata 238  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  15951541 atgttctaaattttgagtatatttcaaaagttttaaata 15951579  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 6685778 - 6685817
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6685778 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 6685817  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 31768324 - 31768285
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31768324 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 31768285  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 13251034 - 13250994
Alignment:
Q  200 atgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  13251034 atgttgtaaattttgattatatttcaaaagtttcaaatatt 13250994  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 572273 - 572234
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  572273 tgttgtaaattttgagtatatttcaaaagtttctaatatt 572234  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 580676 - 580637
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  580676 tgttgtaaattttgagtatatttcaaaagttttaaatatt 580637  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 6664463 - 6664424
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  6664463 tgttgtaaattttgagtgtatttcaaaagtttcaaatatt 6664424  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 6682323 - 6682362
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  6682323 tgttataaattttgagtatattttaaaagtttcaaatatt 6682362  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 38414115 - 38414156
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatattat 242  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  38414115 tgttgtaaattttgagtatatttcaaaagttttaaatattat 38414156  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 37006261 - 37006300
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  37006261 tgttgtaaattttgagtatattttaaaagtttcaaatatt 37006300  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 37006353 - 37006426
Alignment:
Q  237 tattatcatatgagtaattattgtgtttgacttgggtttctagatatgcttttaattccaaattgtgttaccac 310  Q
    ||||||||||| | |||||||  |||||||||||  ||| |||| ||| ||||||||||||||| ||| |||||    
T  37006353 tattatcatattattaattataatgtttgacttgattttgtagacatgtttttaattccaaattttgtaaccac 37006426  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 48715116 - 48715079
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaata 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48715116 tgttgtaaattttgagtatatttcaaaagtttcaaata 48715079  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 27793879 - 27793839
Alignment:
Q  200 atgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  27793879 atgttgtaaattttgagtatatttcaaaagttttaaatatt 27793839  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 80466 - 80502
Alignment:
Q  204 tgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  80466 tgtaaattttgagtatatttcaaaagtttcaaatatt 80502  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 17970 - 18009
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  17970 tgttgtaaattttaagtatatttcaaaagtttcaaatatt 18009  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 174071 - 174110
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  174071 tgttgtaaattttgattatatttcaaaagtttcaaatatt 174110  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 6240698 - 6240659
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  6240698 tgttgtaaattttgagtatatttcaaaagttttaaatatt 6240659  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 26361893 - 26361932
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  26361893 tgttgtaatttttgagtatatttcaaaagtttcaaatatt 26361932  T

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Target: scaffold0933 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 1626 - 1586
Alignment:
Q  200 atgttgtaaattttgagtatatttcaaaagtttcaaatatt 240  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  1626 atgttgtaaattttgattatattttaaaagtttcaaatatt 1586  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 29275385 - 29275420
Alignment:
Q  201 tgttgtaaattttgagtatatttcaaaagtttcaaa 236  Q
    |||||||||||||| |||||||||||||||||||||    
T  29275385 tgttgtaaattttgtgtatatttcaaaagtttcaaa 29275420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 29260363 - 29260397
Alignment:
Q  206 taaattttgagtatatttcaaaagtttcaaatatt 240  Q
    ||||||||| |||||||||||||||||||||||||    
T  29260363 taaattttgtgtatatttcaaaagtttcaaatatt 29260397  T

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