View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_95 (Length: 324)
Name: NF1511_low_95
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_95 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 28089998 - 28089704
Alignment:
| Q |
19 |
ctaaggacttcaatttcattgttgtgcatgatacttcaccacttttacttgctccatccaaattcaactttctttacagcacaaacctgttgaccaatca |
118 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28089998 |
ctaaggacttcaatttcattgcagtgcatgatacttcaccacttttacttgctccatccaaattcaactttctttacagcacaaacctgttgaccaatca |
28089899 |
T |
|
| Q |
119 |
tggctttgtacacaataccttgtgctcctctgccaacaatataccaatcatttaggttctctgtagcctccaacacaagctcgttaaggtgaatccgatc |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28089898 |
tggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttaggttctctgtagcttccaacacaagctcgttaaggtgaatccgatc |
28089799 |
T |
|
| Q |
219 |
attttcccatacggtccttacatttgaattattaggtccacctcctcttttattcaaatacatttgcttaagataaaagacccttttcaattcat |
313 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28089798 |
attttcccatacggtccttacatttgaattattatgtccacctcctcttttattcaaatacatttgcttaagataaaaggcccttttcaattcat |
28089704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 37837507 - 37837329
Alignment:
| Q |
19 |
ctaaggacttcaatttcattgttgtgcatgatacttcaccacttttacttgctccatccaaattcaactttctttacagcacaaacctgttgaccaatca |
118 |
Q |
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||||||||||||||||| ||||| ||||||||||| |||||||| | || || |||||||||||| ||||||||||||||| |||| | | ||| | |
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| T |
37837507 |
ctaaggacttcaatttc---gttgtccatgatacttcgccacttttgcctgttcaatccaaattcaaacttctttacagcacaagcctgctcattaatta |
37837411 |
T |
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| Q |
119 |
tggctttgtacacaataccttgtgctcctctgccaacaatataccaatcatttaggttctctgtagcctccaacacaagctc |
200 |
Q |
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| T |
37837410 |
tggctttgtacacaataccatgtgctcctcttccaataatatactgatcatttaggttctctgtagcctccaaaactagctc |
37837329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 37843075 - 37842960
Alignment:
| Q |
79 |
aattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccttgtgctcctctgccaacaatataccaatcatttaggttct |
178 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||| |||| |||||| |||| ||||||||| |
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| T |
37843075 |
aattcaaacttctttacagcataaacctgttgaccaagcaaagctttgtacacaataccatgtgctcctcttccaataatatattgatcacttaggttct |
37842976 |
T |
|
| Q |
179 |
ctgtagcctccaacac |
194 |
Q |
| |
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||||||||| |||||| |
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| T |
37842975 |
ctgtagcctgcaacac |
37842960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 37850790 - 37850675
Alignment:
| Q |
79 |
aattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccttgtgctcctctgccaacaatataccaatcatttaggttct |
178 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||| || ||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||| |
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| T |
37850790 |
aattcaaccttctttacagcacaaacagtttcacaaattatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggttct |
37850691 |
T |
|
| Q |
179 |
ctgtagcctccaacac |
194 |
Q |
| |
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| |||||||||||||| |
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| T |
37850690 |
cagtagcctccaacac |
37850675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 37832014 - 37831844
Alignment:
| Q |
21 |
aaggacttcaatttcattgttgtgcatgatacttcaccacttttacttgctccatccaaattcaactttctttacagcacaaacctgttgaccaatcatg |
120 |
Q |
| |
|
||||||||||||||| |||| | ||||||||| || ||||| |||| |||| |||||||| || |||||||||||| |||| || |||||||| ||| |
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| T |
37832014 |
aaggacttcaatttc---gttgcgtatgatacttagccgctttttcttgttccacccaaattcgaccttctttacagcaaaaacatgctgaccaattatg |
37831918 |
T |
|
| Q |
121 |
gctttgtacacaataccttgtgctcctctgccaacaatataccaatcatttaggttctctgtagcctccaacac |
194 |
Q |
| |
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|||||||||||| |||| ||| |||| |||||| ||||| || | |||||||||||| ||||||| |||||| |
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| T |
37831917 |
gctttgtacacagtaccatgtcctcccttgccaatgatataacattgatttaggttctcagtagcctgcaacac |
37831844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 37844946 - 37844830
Alignment:
| Q |
75 |
tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccttgtgctcctctgccaacaatataccaatcatttagg |
174 |
Q |
| |
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||||||||||| ||||||| |||| || | |||||||||| || ||||||||||| ||| |||||||| ||||||| |||||| |||||||||| |
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| T |
37844946 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg |
37844847 |
T |
|
| Q |
175 |
ttctctgtagcctccaa |
191 |
Q |
| |
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||||||||||||||||| |
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| T |
37844846 |
ttctctgtagcctccaa |
37844830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 36866194 - 36866079
Alignment:
| Q |
19 |
ctaaggacttcaatttcattgttgtgcatgatacttcaccacttttacttgctccatccaaattcaactttctttacagcacaaacctgttgaccaatca |
118 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| |||| ||| |||| |||||||||||| ||| ||||||| |||||||| || || || | |
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| T |
36866194 |
ctaaggacttcaattt---tgctgcgcatgatacttagccacctttgcttgttccatccaaattgaaccttctttatggcacaaacacgtcgataaacta |
36866098 |
T |
|
| Q |
119 |
tggctttgtacacaatacc |
137 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
36866097 |
tggctttgtacacaatacc |
36866079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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