View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_96 (Length: 320)
Name: NF1511_low_96
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 42006295 - 42005986
Alignment:
| Q |
1 |
tccaataccaacatcatttttcaaatcatctgctgtgaacttaaccttcttctcatcataagttcccaatgaatagtaatcatgtctatcatcatccaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42006295 |
tccaataccaacatcatttttcaaatcatctgctgtgaacttaaccttcttctcatcataatttcccaatgaatagtaatcatgtctatcatcatccaag |
42006196 |
T |
|
| Q |
101 |
ctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtccacacactcccaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006195 |
ctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtccacacactcccaca |
42006096 |
T |
|
| Q |
201 |
taccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccagttttgttaatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006095 |
taccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccagttttgttaatctt |
42005996 |
T |
|
| Q |
301 |
ggagcctatg |
310 |
Q |
| |
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|||||||||| |
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|
| T |
42005995 |
ggagcctatg |
42005986 |
T |
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