View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_high_10 (Length: 439)
Name: NF15120_high_10
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_high_10 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 35854226 - 35853792
Alignment:
| Q |
8 |
tgttgggatctatgtactgtctgtgatatgttgctttttcccttggaatatgtataatcttgttagcaataaactgaaataattcatcttagttcatgtt |
107 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35854226 |
tgttgggatctatgtattgtctgtgatatgttgttttttcccttggaatatgtataatcttgttagcaataaactgaaataattcatcttagttcatgtt |
35854127 |
T |
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| Q |
108 |
tgtttatggttatttgctatttgaaaaatgctttaaagccaaaattgcttgaactcttcgatcaaaagttttttgacagaaa--catactagttcaaata |
205 |
Q |
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| T |
35854126 |
tgtttatggttatttgctatttgaaaaatgctttgaagccaaaattgcttgaactcttcgatcaaaagttttttgacagaaaaacatactagttcaaata |
35854027 |
T |
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| Q |
206 |
aataccattatgggtagggttgaatgagttgagccatccatcccaagcctagttcaaacagaagtgttccactgaataagaaatcattcttaacttcatg |
305 |
Q |
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| T |
35854026 |
aataccattatgggtagggttgaatgagttgagccatccatcccaagcctagttcaaacagaagtgttccactgaataagaaatcattcttaacttcatg |
35853927 |
T |
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| Q |
306 |
gctcaatttggcttaatttatcctcccttgcttttggagttcaatgatccaatcttgtattaactgagtctttcagcnnnnnnngtatgtgtttgtttca |
405 |
Q |
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| T |
35853926 |
gctcaatttggcttaatttatcctcccttgcttttggagttcaatgatccaatcttgtattaactgagtctttcagctttttttgtatgtgtttgtttca |
35853827 |
T |
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| Q |
406 |
ttagcgctcttgcaattcgtctc-ttgaactttgt |
439 |
Q |
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| T |
35853826 |
ttagcgctcttgcaatttgtctctttgaactttgt |
35853792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 60 - 366
Target Start/End: Complemental strand, 35858745 - 35858437
Alignment:
| Q |
60 |
tataatcttgttagcaataaactgaaataattcatcttagttcatgtttgtttatggttatttgctatttgaaaaatgctttaaagccaaaattgcttga |
159 |
Q |
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| T |
35858745 |
tataatcttgatagcaataaactgaaataattcatctcaggtcatgtttgtttctgattatttgctatttaaaaaacgcttttaatccaaaattgcttga |
35858646 |
T |
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| Q |
160 |
actcttcgatcaaaagttttttgacagaaa--catactagttcaaataaataccattatgggtagggttgaatgagttgagccatccatcccaagcctag |
257 |
Q |
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| T |
35858645 |
actctttgattgaaagttttttcacagaaaaacatactagttcaaataaataccattttctgttgggctgaatgagttgaactatccatgccaggcctat |
35858546 |
T |
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| Q |
258 |
ttcaaacagaagtgttccactgaataagaaatcattcttaacttcatggctcaatttggcttaatttatcctcccttgcttttggagttcaatgatccaa |
357 |
Q |
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| T |
35858545 |
ttcaaactgaagttttcaactgaattagaaatcaatcttaacttcatgactcaattttacttaatttatcctccgtagcttgtggagctcaatgatccaa |
35858446 |
T |
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| Q |
358 |
tcttgtatt |
366 |
Q |
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|||| |||| |
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| T |
35858445 |
tcttttatt |
35858437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 35727703 - 35727805
Alignment:
| Q |
276 |
actgaataagaaatcattcttaacttcatggctcaatttggcttaatttatcctcccttgcttttggagttcaatgatccaatcttgtattaactgagtc |
375 |
Q |
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| T |
35727703 |
actgaataagaaatcagtcttaattgcatggtccaatttggcttaatttaagttccctgacttttggaactcaatgagccaatcttgtataaattgagtc |
35727802 |
T |
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| Q |
376 |
ttt |
378 |
Q |
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| T |
35727803 |
ttt |
35727805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 35748467 - 35748509
Alignment:
| Q |
397 |
tttgtttcattagcgctcttgcaattcgtctcttgaactttgt |
439 |
Q |
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| T |
35748467 |
tttgtttcattagtgctcttgcaatttgtctcttgaactttgt |
35748509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 35727496 - 35727545
Alignment:
| Q |
75 |
aataaactgaaataattcatcttagttcatgtttgtttatggttatttgc |
124 |
Q |
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| T |
35727496 |
aataaactgaaatatttcatcttagttcatgtttggttttgattatttgc |
35727545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 35748233 - 35748330
Alignment:
| Q |
143 |
aagccaaaattgcttgaactcttcgatcaaaagttttttgacagaaaca---tactagttcaaataaataccattatgggtagggttgaatgagttga |
237 |
Q |
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|||||||||||||| ||||| || ||| | ||||||||| | ||||| | |||||||||||| ||||||||| || ||| ||||||||||||||| |
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| T |
35748233 |
aagccaaaattgctagaactatttgattagaagttttttaatagaaaaaatatactagttcaaaccaataccattttgtgtaaggttgaatgagttga |
35748330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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