View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_high_22 (Length: 225)
Name: NF15120_high_22
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2329761 - 2329561
Alignment:
| Q |
1 |
tgattataagtcttggataatcatccctttacatgtcagttttgtgagcctaacttacaaaatctattccaatcaaaattttctctcatatcaaattatt |
100 |
Q |
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| T |
2329761 |
tgattataagtcttggataatcatccctttacatgtcagttttgtgagcctaacttacaaaatctattccaatcacaattttctctcatatcaaattatt |
2329662 |
T |
|
| Q |
101 |
cccaacgagaataacgacaaaaattatctatttttctgaagtgacgggcagaaattagtcttaacttacaggatcacttggctgttataaagaaaatata |
200 |
Q |
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| T |
2329661 |
cccaacgagaataacgacaaaaattatctatttttctgaagtgacgggcagaaattagtcttaacttacaggatcacttggctgttataaagaaaatata |
2329562 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
2329561 |
t |
2329561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 47775561 - 47775462
Alignment:
| Q |
85 |
ctcatatcaaattattcccaacgagaataacgacaaaaattatctatttttctgaagtgacgggcagaaattagtcttaacttacaggatcacttggctg |
184 |
Q |
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| T |
47775561 |
ctcatatcaaattattcccaacgagaataacgacaaaaattatctatttttgtgaagtgac-ggcagaaattagtcttaacttacaggatcacttggctg |
47775463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47775691 - 47775602
Alignment:
| Q |
1 |
tgattataagtcttggataatcatccctttacatgtcagttttgtgagcctaacttac-aaaatctattccaatcaaaattttctctcat |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
47775691 |
tgattataagtcttggataatcatccctttacatgtcagttttgtgagcctaacttacaaaaatctattccaatcacaattttctctcat |
47775602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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