View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_high_23 (Length: 219)
Name: NF15120_high_23
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 20753413 - 20753596
Alignment:
| Q |
16 |
gcaaaggacgaatatgtatatggttgtgcaatgttcnnnnnnngagtgttaatttgtcatcttccaataatactaacaacaaacatttgtttgaaaaccc |
115 |
Q |
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| T |
20753413 |
gcaaaggaccaatatgtatatggttgtgcaatgttcaaaaaaagagtgttaatatgtcatcttccaataatactaacaacaaacaaatgtgtgaaaaccc |
20753512 |
T |
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| Q |
116 |
aagagagtgaaatttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttacttgg |
199 |
Q |
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| T |
20753513 |
aagagagtgaactttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttagttgg |
20753596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 20759213 - 20759284
Alignment:
| Q |
128 |
tttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttacttgg |
199 |
Q |
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| T |
20759213 |
tttgaataacttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttagttgg |
20759284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 20802101 - 20802162
Alignment:
| Q |
138 |
ttaccaatcaaatcagcagcatttttgccattgctaaacctcccagttggtttcttacttgg |
199 |
Q |
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| T |
20802101 |
ttaccaatcaaatcagcagcattcttgccattgcaaaatctcccagcaggtttcttagttgg |
20802162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 40638741 - 40638690
Alignment:
| Q |
139 |
taccaatcaaatcagcagcatttttgccattgctaaacctcccagttggttt |
190 |
Q |
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| T |
40638741 |
taccaataaaatcagcagcatttttgccattgctaaatctcccagttggttt |
40638690 |
T |
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