View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_high_5 (Length: 505)
Name: NF15120_high_5
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 24751037 - 24750559
Alignment:
| Q |
9 |
gaagaatatagatcaaagagagaaatttaccccatggcaagcagtgtaagagtccaagccaaggtagcaattgaagcagcagatggcaagctctcagcag |
108 |
Q |
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| T |
24751037 |
gaagaatgtagatcaaagagagaaatttaccccatggcaagcagtgtaagagtccaagccaaggtagcaattgaagcagcagatggcaagctctcagcag |
24750938 |
T |
|
| Q |
109 |
tccatgaacagatatgtttgactcctgatattgtcgatgcagcaccaattactccagccaacaaagaaattgtaacaaagaatccagttgaagcatttcc |
208 |
Q |
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| T |
24750937 |
tccatgaacagatatgtttgactcctgatattgtcgatgcagcaccaattactccagccaacaaagaaattgtaacaaagaatccagttgaagcatttcc |
24750838 |
T |
|
| Q |
209 |
cattgggaagaaaatgggtgaaaaatgagctggaagatttaattccggacctgcgtaatttcatataaaaataagtatgctgaaattttatttccggtct |
308 |
Q |
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| T |
24750837 |
cattgggaagaaaatgggtgaaaaatgagctggaagatttaattccggacctgcgtaatttcatataaaaataagtatgctgaagttttatttccggtct |
24750738 |
T |
|
| Q |
309 |
ggtaaccctaactcacacgaacacatacacgttaccacgcaaatagctgccgaaaattcaacagagtctccattgtttttctgacattctaaaaatattt |
408 |
Q |
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| T |
24750737 |
ggtaaccctaactcacatgaacacgtacacgttaccacgcaaatagctactgaaaattcaatagagtctccattgtttttctgacatcctaaaaatattt |
24750638 |
T |
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| Q |
409 |
agcaaatgtgaaagatatgaaatattttcttacctataataaatccatgatctattgctctattcatagcccatgcacc |
487 |
Q |
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| T |
24750637 |
agcaaatgtgaaagatatgaaattttttcttacctataataaaaccatgatctattgctctattcatagcccatgcacc |
24750559 |
T |
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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 246
Target Start/End: Original strand, 21743476 - 21743648
Alignment:
| Q |
74 |
agcaattgaagcagcagatggcaagctctcagcagtccatgaacagatatgtttgactcctgatattgtcgatgcagcaccaattactccagccaacaaa |
173 |
Q |
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||||| |||||| |||||||||| |||||| | ||||||||||| |||||| |||| |||||| || ||| || |||| |||||||| | |||| |
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| T |
21743476 |
agcaactgaagctgcagatggcaggctctctgaagtccatgaacggatatggttgagtcctgaaatcaatgatccaattccaacaactccagcaatcaaa |
21743575 |
T |
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| Q |
174 |
gaaattgtaacaaagaatccagttgaagcatttcccattgggaagaaaatgggtgaaaaatgagctggaagat |
246 |
Q |
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| T |
21743576 |
gcaaatgtcacaaagaatccggttgcagcatttcccatagggaagtatatgggtgaaaaatgagcaggaagat |
21743648 |
T |
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