View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_high_6 (Length: 500)
Name: NF15120_high_6
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 43453905 - 43453427
Alignment:
| Q |
1 |
gcttttggggcacttgggtcatgctccaaatttctaatcccaaaggtgttaagagtccaacattgaatgagataaggcataaaatatgtttataagcagg |
100 |
Q |
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| T |
43453905 |
gcttttggggcacttgggtcatgctccaaatttctaatcccaaaggtgttaagagtccaacattgaatgagataaggcataaaatatgtttataagcagg |
43453806 |
T |
|
| Q |
101 |
tgtagtcttccttttacgagccgtttatttaagggttaatccaacttttaagtataactactactaaagtcactaacccgcattttatgaatgactactt |
200 |
Q |
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| T |
43453805 |
tgtagtcttccttttacgagccgtttatttaagggttaatccaacttttaagtataactactactaaagtcactaacccacattttatgaatgactactt |
43453706 |
T |
|
| Q |
201 |
ttaaattcacacatatgattgagtatagtttgttgatagtataaggcagtttactgggaaaaagtaattaaactttgattaaaataagtagctagaaaac |
300 |
Q |
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| T |
43453705 |
ttaaattcacacatatgattgagtatagtttgttgatagtataaggcagtttactggaaaaaagtaattaaactttgattaaaataagtagctagaaaac |
43453606 |
T |
|
| Q |
301 |
gaactttgaagctcacaaaagaacaatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaa |
400 |
Q |
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| T |
43453605 |
gaactttgaagctcacaaaagaacaatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaa |
43453506 |
T |
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| Q |
401 |
tcaattgccataagagtggaatcttcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactc |
479 |
Q |
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| T |
43453505 |
tcaattgccataagagtggaatcttcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactc |
43453427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 325 - 479
Target Start/End: Complemental strand, 43463020 - 43462866
Alignment:
| Q |
325 |
aatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatct |
424 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||||| |||||| |
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| T |
43463020 |
aatggttagagattggtataaattggagaaggggattatttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatct |
43462921 |
T |
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| Q |
425 |
tcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactc |
479 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
43462920 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacaatgcataactc |
43462866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 477
Target Start/End: Complemental strand, 8403628 - 8403596
Alignment:
| Q |
445 |
gaaattttcaggcttaagatcacgatgcataac |
477 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
8403628 |
gaaattctcaggcttaagatcacgatgcataac |
8403596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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