View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15120_high_7 (Length: 492)

Name: NF15120_high_7
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15120_high_7
NF15120_high_7
[»] chr2 (3 HSPs)
chr2 (251-482)||(26661413-26661644)
chr2 (17-150)||(26661745-26661878)
chr2 (257-387)||(6049912-6050043)
[»] chr6 (3 HSPs)
chr6 (251-482)||(21481331-21481562)
chr6 (17-149)||(21481663-21481797)
chr6 (251-385)||(19701161-19701296)
[»] chr7 (2 HSPs)
chr7 (263-461)||(13331531-13331727)
chr7 (263-461)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (263-461)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (251-416)||(10637619-10637784)
chr8 (251-416)||(32717810-32717975)
[»] chr1 (2 HSPs)
chr1 (251-416)||(22893774-22893939)
chr1 (257-387)||(44306129-44306259)
[»] chr3 (1 HSPs)
chr3 (263-444)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (251-385)||(9594-9729)
[»] chr4 (1 HSPs)
chr4 (257-338)||(13893697-13893778)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 251 - 482
Target Start/End: Complemental strand, 26661644 - 26661413
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661644 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 26661545  T
Q  351 ggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcggg 450  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26661544 ggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcggg 26661445  T
Q  451 aatggcaagggtagaagaggtattttcttgga 482  Q
    |||||||||||||||||||||||||| |||||    
T  26661444 aatggcaagggtagaagaggtattttgttgga 26661413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 26661878 - 26661745
Alignment:
Q  17 agaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgatttaataaaaacaagttgtctctaacctttttcttcattgattcat 116  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  26661878 agaattcagcgttatggttattagcatattttggaaaaagttagaagaaggtggtttaataaaaacaagttgtctctaaccttttttttcattgattcat 26661779  T
Q  117 gattgggaaaaaacaagaattgccaaacagtggg 150  Q
    ||||||||||||||||||||||||||||||||||    
T  26661778 gattgggaaaaaacaagaattgccaaacagtggg 26661745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 257 - 387
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
Q  257 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||| |||||||||||||| | |||| || | |||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  357 tagttgatgcaca-cacaaagatcatgggttt 387  Q
     |||||||| ||| ||||||||| ||||||||    
T  6049943 cagttgatgaacaccacaaagatgatgggttt 6049912  T

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Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 251 - 482
Target Start/End: Complemental strand, 21481562 - 21481331
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  21481562 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaatt 21481463  T
Q  351 ggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcggg 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||    
T  21481462 ggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcagg 21481363  T
Q  451 aatggcaagggtagaagaggtattttcttgga 482  Q
    |||||||||||||||||||||||||| |||||    
T  21481362 aatggcaagggtagaagaggtattttgttgga 21481331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 21481797 - 21481663
Alignment:
Q  17 agaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgatttaataaaaacaagttgtctctaacctttttctt-cattgattca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| || ||||||||||    
T  21481797 agaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgggttaataaaaacaagttgtctctaaacttttttttgcattgattca 21481698  T
Q  116 tgattggg-aaaaaacaagaattgccaaacagtgg 149  Q
    |||||||| ||||||||||||||||||||||||||    
T  21481697 tgattgggaaaaaaacaagaattgccaaacagtgg 21481663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 19701296 - 19701161
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||| ||||||||| ||||| ||| |    
T  19701296 gagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaat 19701197  T
Q  351 ggcaagtagttgatgcacac-acaaagatcatgggt 385  Q
     ||||| |||||||| |||| |||||||||||||||    
T  19701196 agcaagcagttgatgaacactacaaagatcatgggt 19701161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 263 - 461
Target Start/End: Original strand, 13331531 - 13331727
Alignment:
Q  263 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 362  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  363 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 461  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||    
T  13331631 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatggcaaggg 13331727  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 263 - 461
Target Start/End: Original strand, 13342446 - 13342642
Alignment:
Q  263 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 362  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  363 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 461  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  13342546 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 13342642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 263 - 461
Target Start/End: Original strand, 5672002 - 5672198
Alignment:
Q  263 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 362  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  363 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 461  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  5672102 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 5672198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 251 - 416
Target Start/End: Complemental strand, 10637784 - 10637619
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||      
T  10637784 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaac 10637685  T
Q  351 ggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 416  Q
     ||||| |||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  10637684 agcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 10637619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 251 - 416
Target Start/End: Original strand, 32717810 - 32717975
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||      
T  32717810 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaac 32717909  T
Q  351 ggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 416  Q
     ||||| |||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  32717910 agcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 32717975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 251 - 416
Target Start/End: Complemental strand, 22893939 - 22893774
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||      
T  22893939 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaac 22893840  T
Q  351 ggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 416  Q
     ||||| |||||||| |||| |||||||||||||||||| |||| || |||| ||||||||||||||    
T  22893839 agcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaagatcatgggtgaaaa 22893774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 387
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
Q  257 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaag 356  Q
    |||||||||| ||||||||||||||||||||||||||||||   | | |||| |||| ||||||||| |||||||||||||| | |||| || | |||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  357 tagttgatgcaca-cacaaagatcatgggttt 387  Q
     |||||||| ||| ||||||||| ||||||||    
T  44306160 cagttgatgaacaccacaaagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 263 - 444
Target Start/End: Original strand, 15761973 - 15762154
Alignment:
Q  263 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 362  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || |||| |||| ||||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  363 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaat 444  Q
    ||| ||| |||||||||||  | |  |||||||| |||| | |||| ||||||||||||||  ||||||| |||||||||||    
T  15762073 atgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 251 - 385
Target Start/End: Complemental strand, 9729 - 9594
Alignment:
Q  251 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 350  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||      
T  9729 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaac 9630  T
Q  351 ggcaagtagttgatgcacac-acaaagatcatgggt 385  Q
      |||| |||||||| |||| |||||||||||||||    
T  9629 aacaagcagttgatgaacactacaaagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 13893697 - 13893778
Alignment:
Q  257 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatc 338  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||| ||||||||||||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatc 13893778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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