View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_1 (Length: 1080)
Name: NF15120_low_1
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 419 - 1061
Target Start/End: Complemental strand, 43454538 - 43453898
Alignment:
| Q |
419 |
atcgtgaagatatcttaccaccataaaatggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccataaca |
518 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454538 |
atcgtgaagatatcttaccaccataaaagggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccataaca |
43454439 |
T |
|
| Q |
519 |
ctcttctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaaagaagattgttagtaacaaagactatatatg |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454438 |
ctcttctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaaagaagattgttagtaacaaagactatatatg |
43454339 |
T |
|
| Q |
619 |
atcattacaccaatagtaggtatnnnnnnngaagaagactgtatccgtgcttattccatgagtggttcaccactcttttggaaggtattaacaactaggc |
718 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454338 |
atcattacaccaatagtaggtataaaaaaagaagaagactgtatccgtgcttattccatgagtggttcaccactcttttggaaggtattaacaactaggc |
43454239 |
T |
|
| Q |
719 |
gctttgagtttttgtgttgttttaagagattcatataggctttgacaagctggttaataacttctgttttttagttttatcattgtagagaaattaaact |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454238 |
gctttgagtttttgtgttgttttaagagattcatataggctttgacaagctggttaataacttctgttttttagttttatcattgtagagaaattaaact |
43454139 |
T |
|
| Q |
819 |
ataccttttttcnnnnnnnntgtatctcgctttaatccatccttattcatcctaatttgtctgcctgattgcatcctaaaagatatggttttgactagag |
918 |
Q |
| |
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| T |
43454138 |
ataccttttttc-aaaaaaatgtatctcgctttaatccatccttattcatcctaatttgtctgcccgattgcatcctaaaagatatggttttgactagag |
43454040 |
T |
|
| Q |
919 |
gcttaacaagttcgataatataaagtaaattgtgcttctgtaagtgtaatcctgctaatgattaaaaagatttcattcgtacaagtgtnnnnnnnnnnnt |
1018 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
43454039 |
gcttaacaagttcgataatataaagtaaattgtgctgctgtaagtgtaatcctgctaatgattaaaaagatttaattcgtacaagtgt-aaaaaaaaaat |
43453941 |
T |
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| Q |
1019 |
tacactttcaatcaattgtacatcatcaagtcattgcttttgg |
1061 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43453940 |
tacactttcaatcaattgcacatcatcaagtcattgcttttgg |
43453898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 43454956 - 43454579
Alignment:
| Q |
1 |
ttattttttcttcttaaaaacaattgcaatagctgaagatgcaacaaccagaaacaataaaaagcactagaataaagaaaatatcaaaatgtgtattgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454956 |
ttattttttcttcttaaaaacaattgcaatagctgaagatgcaacaaccataaacaataaaaagcactagaataaagaaaatatcaaaatgtgtattgaa |
43454857 |
T |
|
| Q |
101 |
tctaacgatacttaaatgtaaaaatatgaaatatgtttcactaatttcataatttnnnnnnnnnnnnngagtagtgaaacttacttagaacttcatgagc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43454856 |
tctaacgatacttaaatgtaaaaatatgaaatatgtttcactaatttcataatttaaaaaagaaaaaagagtagtgaaacttacttagaacttcatgagc |
43454757 |
T |
|
| Q |
201 |
tttaattcgtgttttaggatctctatcaagcatctttttaaccaagtctttggcactttcagaaatacttggccaaggatcggaacagaaatcaacttca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43454756 |
tttaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagatatacttggccaaggatcggaacagaaatcaacttca |
43454657 |
T |
|
| Q |
301 |
ccatgtaaaacctcatcaaatatctcttgatccaattctattaccaaagaacataatcaaaatcctctattattatat |
378 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454656 |
ccatgtaaaacctcatcaaatatctctcgatccaattctattaccaaagaacataatcaaaatcctctattattatat |
43454579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 43463678 - 43463295
Alignment:
| Q |
3 |
attttttct-tcttaaaaacaattgcaatagctgaagatgcaacaaccagaaacaataaaaagcactagaataaagaaaatatcaaaatgtgtattgaat |
101 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||| || ||||| |
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| T |
43463678 |
attttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactagtataaagaaaatatgaaaatgtataatgaat |
43463579 |
T |
|
| Q |
102 |
ctaacgatacttaaa-tgtaaaaatatgaaatatgtttcactaatttcataatttnnnnnnnnnnnnn------gagtagtgaaacttacttagaacttc |
194 |
Q |
| |
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||| |||||||||| ||| |||||| ||||||||||| |||| || |||||| |||| |||||||||||||||| |||| |
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| T |
43463578 |
ctatggatacttaaaatgtgaaaataaagaatatgtttcagtaatatcgtaatttaaaaaagaaaaagaaaaaagagtggtgaaacttacttagagcttc |
43463479 |
T |
|
| Q |
195 |
atgagctttaattcgtgttttaggatctctatcaagcatctttttaaccaagtctttggcactttcagaaatacttggccaaggatcggaacagaaatca |
294 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
43463478 |
atgtgctgtaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagaaatacttggccaaggatccgaagagaaatca |
43463379 |
T |
|
| Q |
295 |
acttcaccatgtaaaacctcatcaaatatctcttgatccaattctattaccaaagaacataatcaaaatcctctattattatat |
378 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
43463378 |
atttcaccatgtaaaaccttatcaaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatat |
43463295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 423 - 639
Target Start/End: Complemental strand, 43463247 - 43463028
Alignment:
| Q |
423 |
tgaagatatcttaccaccataaaatggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccataacactct |
522 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
43463247 |
tgaagataacttaccaccatcaaatggaggtgctccacataagaaaaagtatatgatcacacccgcactccacacatcagcttctggcccataacactct |
43463148 |
T |
|
| Q |
523 |
tctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaaagaagattgttagtaacaaagactatatatgatca |
622 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| || ||||||||||||||| |||| || |||||||||||||| ||||||||||||||| |||| |
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|
| T |
43463147 |
cttataacctcaggtgccatataataaggacttcctactgcatcactaaatttttctcctgcaatagaagattgttagtcacaaagactatatattatca |
43463048 |
T |
|
| Q |
623 |
ttac---accaatagtaggt |
639 |
Q |
| |
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|||| ||||||||||||| |
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| T |
43463047 |
ttacagtaccaatagtaggt |
43463028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 777 - 816
Target Start/End: Complemental strand, 43446274 - 43446235
Alignment:
| Q |
777 |
aacttctgttttttagttttatcattgtagagaaattaaa |
816 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
43446274 |
aacttctgtttttttgttttatcattatagagaaattaaa |
43446235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 24419871 - 24419939
Alignment:
| Q |
227 |
caagcatctttttaaccaagtctttggcactttcagaaatacttggccaaggatcggaacagaaatcaa |
295 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| || ||||||||| |
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| T |
24419871 |
caagcatcttcttaaccaagtcttttgcactttcagagatactaggccatggatccgatgagaaatcaa |
24419939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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