View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15120_low_10 (Length: 454)
Name: NF15120_low_10
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 7739306 - 7739740
Alignment:
| Q |
1 |
atttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
7739306 |
atttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactgggaaagagacgg |
7739405 |
T |
|
| Q |
101 |
tagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739406 |
tagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgac |
7739505 |
T |
|
| Q |
201 |
ccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7739506 |
ccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagttactttgggcatttcggccaatg |
7739605 |
T |
|
| Q |
301 |
agaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7739606 |
agaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtag |
7739705 |
T |
|
| Q |
401 |
gggtttgccacacccgacgaagctccagtcgctac |
435 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
7739706 |
gggtttaccacacccgacgaagctccagtcgctac |
7739740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 7726988 - 7727422
Alignment:
| Q |
1 |
atttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7726988 |
atttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcgaaagagacgg |
7727087 |
T |
|
| Q |
101 |
tagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgac |
200 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
7727088 |
tatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggc |
7727187 |
T |
|
| Q |
201 |
ccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||| || || || ||||||||||||||||| ||||||| |
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|
| T |
7727188 |
ccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccggttactttgggcatttcagccaatg |
7727287 |
T |
|
| Q |
301 |
agaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtag |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7727288 |
agaggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcggccaggtag |
7727387 |
T |
|
| Q |
401 |
gggtttgccacacccgacgaagctccagtcgctac |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727388 |
gggtttgccacacccgacgaagctccagtcgctac |
7727422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 7731148 - 7731582
Alignment:
| Q |
1 |
atttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731148 |
atttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcgaaagagacgg |
7731247 |
T |
|
| Q |
101 |
tagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgac |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
7731248 |
tatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggc |
7731347 |
T |
|
| Q |
201 |
ccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||| |||| || |||||||||||||| ||||||||||| |||| |
|
|
| T |
7731348 |
ccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagttactttcggcatttcggctaatg |
7731447 |
T |
|
| Q |
301 |
agaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtag |
400 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7731448 |
agaggaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtag |
7731547 |
T |
|
| Q |
401 |
gggtttgccacacccgacgaagctccagtcgctac |
435 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
7731548 |
gggtttaccacacccgacgaagctccagtcgctac |
7731582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 7713471 - 7713867
Alignment:
| Q |
1 |
atttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacgg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| | |
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|
| T |
7713471 |
atttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcgaaagagactg |
7713570 |
T |
|
| Q |
101 |
tagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgac |
200 |
Q |
| |
|
|||| | ||| ||||||||||||| |||||| |||||||||||| |||||||||| ||| || | || |||||||| ||| || || ||||| | | |
|
|
| T |
7713571 |
taggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattcagggattggc |
7713670 |
T |
|
| Q |
201 |
ccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatg |
300 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||| |||||||| |||||||||||||||| |||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
7713671 |
ccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagttactttcggcatttcggccaatg |
7713770 |
T |
|
| Q |
301 |
agaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccagg |
397 |
Q |
| |
|
|||| | | ||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
7713771 |
agagcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcggccagg |
7713867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 37 - 430
Target Start/End: Original strand, 7699162 - 7699555
Alignment:
| Q |
37 |
tcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagggagccgaacgacgccggaataacaccggttaa |
136 |
Q |
| |
|
||||||||| ||| || |||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||| |||| ||| |
|
|
| T |
7699162 |
tcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataa |
7699261 |
T |
|
| Q |
137 |
cttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccactaagactgttggaaccaaggtcgagtctttgt |
236 |
Q |
| |
|
|||||||||||||||||||| ||||| || || |||||||| |||||| || | |||||| | ||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
7699262 |
cttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgt |
7699361 |
T |
|
| Q |
237 |
agtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgagaggaagttaagatatggaaggtcgccaaactccg |
336 |
Q |
| |
|
||||||||||||||||| |||||| |||| || |||||||||||||| |||||||||||||||||||| | | ||||||| || |||| ||||||||||| |
|
|
| T |
7699362 |
agtctttggagtttgctaaaagagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccg |
7699461 |
T |
|
| Q |
337 |
ctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtc |
430 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||| || ||||||||||||||||| |
|
|
| T |
7699462 |
ctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagctccagtc |
7699555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 12908348 - 12908070
Alignment:
| Q |
1 |
atttattatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacgg |
100 |
Q |
| |
|
|||||||||| |||||| |||||| | ||||| ||||||||||||| ||||||||||| || |||||| |||| ||||| ||||| || |||||||| |
|
|
| T |
12908348 |
atttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactgggagagagacgg |
12908249 |
T |
|
| Q |
101 |
tagggagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgac |
200 |
Q |
| |
|
||||| | ||| |||||| ||||||||||||| ||||||||||||||||||||||| ||| | ||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
12908248 |
tagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtggggatcggg |
12908149 |
T |
|
| Q |
201 |
ccactaagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagtta |
279 |
Q |
| |
|
|||||||| ||||||| ||| | ||| ||| | | | ||| |||||||||||||||| |||| || |||||||||| |
|
|
| T |
12908148 |
ccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
12908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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