View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_11 (Length: 448)
Name: NF15120_low_11
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 42545192 - 42544765
Alignment:
| Q |
1 |
ttactttgcatttgtttttcatagtttatcttttgttataggtgcatgtttgtgcaatcttttatgcatgagtagtcatattaacttgatgtttgactca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42545192 |
ttactttgcatttgtttttcatagtttatcttttgtta--ggtgcatgcttgtgcaatcttttatgcatgattagtcatattaacttgatgtttgactca |
42545095 |
T |
|
| Q |
101 |
aactaagtagcagttgttgagccttttgggttttttggcttgctcgtgcaacgaattgtccctctaacaaaaggcagctttaagcttgttcacgtaaatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42545094 |
aactaagtagtagttgttgagccttttgggttttttggcttgctcgtgcaacgaattgtccctctaacaaaaggcagctttaagcttgttcacgtaaatt |
42544995 |
T |
|
| Q |
201 |
taaatccaagttatgtcattgaatttcgagnnnnnnnnnnnnnnnnaaaaacaatgatataagtatacgtcgaaacatctttggtggacaattaaaaaca |
300 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42544994 |
taaatccaagttatgtcattgaatttcgacttttatttttatttttaaaaacaatgatataagtatacgtcaaaacatctttggtggacaattaaaaaca |
42544895 |
T |
|
| Q |
301 |
tctttgatggacaataaaaatttataaataaatgtcaacgaaagttgactcagttgataatgagttgacttactataaaagtgtggagtcaactttctct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42544894 |
tctttgatggacaataaaaatttataaataaatgtcaacgaaaattgactcagttgataatgagttgacttaccataaaagtgtggagtcaactttctct |
42544795 |
T |
|
| Q |
401 |
ttcaatatgaatatctctttaatacataag |
430 |
Q |
| |
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|||||| |||||| |||||||||||||||| |
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|
| T |
42544794 |
ttcaatgtgaatacctctttaatacataag |
42544765 |
T |
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