View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_13 (Length: 399)
Name: NF15120_low_13
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_13 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 25 - 386
Target Start/End: Original strand, 35676180 - 35676534
Alignment:
| Q |
25 |
ctccccctatatcattatccaaatttatatttgcttacatatatgaagaatttaacggtatatttaactgtgcaagttgcaatgttatcggaaaaaacag |
124 |
Q |
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| T |
35676180 |
ctccccctatatcattatccaaatttatatttgcttacatatatgaagaatttaacggtatatgcaactgtgcaagttgcaatgttatcggaaaaaacag |
35676279 |
T |
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| Q |
125 |
tacatgcaacgtgacttgttctcattgtatgctttgattttcaccttatcattattcattattagtacaatcatttagtcaccataattaaatataatat |
224 |
Q |
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| T |
35676280 |
tacatgcaacgtgacttgttctcatcgtatgctttgattttcaccttatcattattcattattagtacaatcatttagtcacca----taaatataatat |
35676375 |
T |
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| Q |
225 |
agaggaagatatgagaagaagaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatagaaaccaaagcttaa |
324 |
Q |
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| T |
35676376 |
agaggaagatatg---agaagaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatagaaaccaaagcttaa |
35676472 |
T |
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| Q |
325 |
gccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
386 |
Q |
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| T |
35676473 |
gccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
35676534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 35655383 - 35655466
Alignment:
| Q |
303 |
ctcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
386 |
Q |
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| T |
35655383 |
ctcaacagaaaccaaaggttaagccatgtccacctttctacacagttctctttcacaggaaatcttctcttcattccctatgct |
35655466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 35645953 - 35646038
Alignment:
| Q |
301 |
cactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
386 |
Q |
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| T |
35645953 |
cactcaacaaaaaccaaagcttaagccatgtccaccattctgccaagttctctttcacatgaaatcttctcttcattccgtatgct |
35646038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 35672949 - 35673025
Alignment:
| Q |
312 |
aaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttc--tcttcattccctatgct |
386 |
Q |
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| T |
35672949 |
aaccaaaggttaagccatgtccacctttctacaaaattctctttcgcatgaaagtttctatattcattccctatgct |
35673025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 4203 - 4273
Alignment:
| Q |
316 |
aaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattccctatgct |
386 |
Q |
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| T |
4203 |
aaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattccctatgct |
4273 |
T |
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