View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_16 (Length: 293)
Name: NF15120_low_16
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 64 - 278
Target Start/End: Complemental strand, 9126561 - 9126347
Alignment:
| Q |
64 |
ttccaactcgttaaggaatcatcacaagatcaatgtgttcaccctgagttttgcctatattgtacaaataagaaaaccatgatttcacttcctaccactt |
163 |
Q |
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| T |
9126561 |
ttccaactcgttaaggaatcatcacaagatcaatgtgtttatcctgagttttgcctgtattgtacaaatcagaaaaccatgatttcgcttcctacaactt |
9126462 |
T |
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| Q |
164 |
caggtccagttccattctttgtctctgaaattgactacaagttacataatatttcattttctgaccccgacaattgccttccaaagatgttaccaaagtt |
263 |
Q |
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| T |
9126461 |
caggtccagttcaattctttgtctctgaaattgactacaagttacaaattatttcattttccgacccggacaattgccttccaaagatgttaccaaagct |
9126362 |
T |
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| Q |
264 |
taacacttcatcatt |
278 |
Q |
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||||||||||||||| |
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| T |
9126361 |
taacacttcatcatt |
9126347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 9071174 - 9071036
Alignment:
| Q |
14 |
agtgcaaagaatcatcttgtggacctaagcaacctcctattaaatttcccttccaactcgttaaggaatcatcacaagatcaatgtgttcaccct---ga |
110 |
Q |
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| T |
9071174 |
agtgcagagaatcatattgtggacctaaccaacctcttattaaatttcccttccaaatcgttaaggaatcatcacaagatcaatgtgtttatcctaaaga |
9071075 |
T |
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| Q |
111 |
gttttgcctatattgtac---aaataagaaaaccatgat |
146 |
Q |
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| T |
9071074 |
gttctgcctatattgtactgaaaataagaaaaccatgat |
9071036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 9087427 - 9087341
Alignment:
| Q |
64 |
ttccaactcgttaaggaatcatcacaagatcaatgtgttcaccctgagttttgcctatattgtac---aaataagaaaaccatgatt |
147 |
Q |
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| T |
9087427 |
ttccaactcgttaaggaatcatcacaagatcaatgtgtttatcctgagttttgcttatattgtactaaaaataagagaaccatgatt |
9087341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 8866905 - 8866785
Alignment:
| Q |
8 |
atgaagagtgcaaagaatcatcttgtggacctaagcaacctcctattaaatttcccttccaactcgttaaggaatcatcacaagatcaatgtgttcaccc |
107 |
Q |
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| T |
8866905 |
atgaagagtgcagagaattgtcatgtggaccttacgaaccgattattcgattccccttccaacttgttaaggaatcatcacaacatgaatgtgtttatcc |
8866806 |
T |
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| Q |
108 |
tgagttttgcctatattgtac |
128 |
Q |
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| T |
8866805 |
tgagttttgcctatattgtac |
8866785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 8862986 - 8862919
Alignment:
| Q |
61 |
cccttccaactcgttaaggaatcatcacaagatcaatgtgttcaccctgagttttgcctatattgtac |
128 |
Q |
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||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
8862986 |
cccttccaactagttgaggaatcatcacaagatcaatgtactcatcctgagttttgcctatattgtac |
8862919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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