View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_18 (Length: 276)
Name: NF15120_low_18
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 7832562 - 7832808
Alignment:
| Q |
10 |
acacagatcaataaaactatgtaaaacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattacttggtacagaaggtagtttgtt |
109 |
Q |
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| T |
7832562 |
acacagatcaataaaactatgtaaaacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattacttggtacagaaggtagtttgtt |
7832661 |
T |
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| Q |
110 |
cctaaacctcgtatgtttcaaatcatacaaacttgtcaccaaaaccaaagatctaagagtttagtctgcaaacatcaagtcatctaaacctcggtagttt |
209 |
Q |
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| T |
7832662 |
cctaaacctcgtatgtttcaaatcatacaaacttgtcaccaaaaccaaagatctaagagtttagtctgcaaacatcaagtcatctaaacctcggtagttt |
7832761 |
T |
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| Q |
210 |
gaatcctactgcaagtatgcaaccgttcaaatcttatcatacctcat |
256 |
Q |
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| T |
7832762 |
gaatcctactgcaagtatgcaaccgttcaaatcctatcatacctcat |
7832808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 7914765 - 7914887
Alignment:
| Q |
34 |
aacaaatttacagtaagctttctgttctagaagggagcttcttgaagaaattacttggtacagaaggtagtttgttcctaaacctcgtatgtttcaaatc |
133 |
Q |
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| T |
7914765 |
aacagatttacagtaaactatctgttctagcagggagcctcttgaagaaattactcggaacagaaggtagtttgttcctaaactttggatgtctcaaatt |
7914864 |
T |
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| Q |
134 |
atacaaacttgtcaccaaaacca |
156 |
Q |
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| T |
7914865 |
atacaaacctgtcaccaaaacca |
7914887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 7834489 - 7834416
Alignment:
| Q |
83 |
attacttggtacagaaggtagtttgttcctaaacctcgtatgtttcaaatcatacaaacttgtcaccaaaacca |
156 |
Q |
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|||||| | ||||||||||||||||||||||||| | | |||| |||||| |||||||| |||||| ||||||| |
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| T |
7834489 |
attactcgatacagaaggtagtttgttcctaaactttggatgtctcaaattatacaaacctgtcactaaaacca |
7834416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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