View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_19 (Length: 247)
Name: NF15120_low_19
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47340054 - 47339815
Alignment:
| Q |
1 |
aggttcttcattttggattccagtgcatcctccacaccaccctcttcatcagattcttcatcaccgtcttttccatcagggtcattttcatctaatggac |
100 |
Q |
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| T |
47340054 |
aggttcttcattttggattccagtgcatcctccacaccaccctcttcgtcagattcttcatcaccgtcttttccatcagggtcattttcatctaatggac |
47339955 |
T |
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| Q |
101 |
caagcttgtccggagatttttcaaatataaccattaactctttaataccttcatcagaaatgaagtttccgtcaatgtccagacgttcaaaatcaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47339954 |
caagcttgtccggagatttttcaaatataaccattaactctttaataccttcatcagaaatgaagtttccgtcaatgtccagacgttcaaaatcaacctt |
47339855 |
T |
|
| Q |
201 |
ctgcaacacggtgagagccaattgtcgagccccgtctctg |
240 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| |
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| T |
47339854 |
ctgcaacacagtgagagccaattgttgagccccgtctctg |
47339815 |
T |
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