View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_2 (Length: 646)
Name: NF15120_low_2
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 153 - 646
Target Start/End: Original strand, 47416542 - 47417035
Alignment:
| Q |
153 |
gagtttctatgtgcgcattggaaagtgtcttgcacagcgacattaagcttttgcttttaccaactgaagatcgacaacctggttgttatttcttcaatga |
252 |
Q |
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| T |
47416542 |
gagtttctatgtgcgcattggaaagtgtcttgcacagcgacattaagcttttgcttttaccaactgaagatcgacagcctggttgttatttcttcaatga |
47416641 |
T |
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| Q |
253 |
gtggtcaacaaatctgagtttgtacgaactttttgaatctaaattccaaaagttgcttgtattactggtgatcctttactattttgcaatgttgcgggtg |
352 |
Q |
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| T |
47416642 |
gtggtcaacaaatctgagtttgtacgaactttttgaatctaaattccaaaagttgcttgtattactggtgatcctttactattttgcaatgttgcgggtg |
47416741 |
T |
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| Q |
353 |
agccaaaaatttcctttaactagaactcaaatccagcgggtttgaaatttgaaaggtgtaatgaggagcttttgagcgatatcctcaaacgtgaatgtga |
452 |
Q |
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| T |
47416742 |
agccaaaaatttccttgaactagaactcaaatccagcgggtttgaaatttgaaaggtgttatgaggagcttttgagttatatcctcaaacgtgaatgtga |
47416841 |
T |
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| Q |
453 |
tcctcctagattgaagaagtacttcagtaagtgtcattgagtcgtctctgaattttccgaactagaatttaatgtttgatatgttgnnnnnnnatcttgc |
552 |
Q |
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| T |
47416842 |
tcctcctagatcgaagaagtacttcagtaagtgtcattgagtcgtctctgaattttccgaactagaatttaatgtttgatatgttgtttttttatcttgc |
47416941 |
T |
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| Q |
553 |
aaaggcactaaaaatgaagagaggcaggttggctatactacttgccaaggcgaaaaacaaaggaaaatgttcatgcttcactgaaagatttgaa |
646 |
Q |
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| T |
47416942 |
aaaggcactaaaaatgaagagaggcaggttggctatactacttgccaaggcgaaaaacaaaggaaaatgttcatgcttcactgaaagatttgaa |
47417035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47415765 - 47415830
Alignment:
| Q |
1 |
aatagccaaaaacccctccgaaattgtgaattcttgcaaataccccctcaaattagagaaaaggtg |
66 |
Q |
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| T |
47415765 |
aatagccaaaaacccctccgaaattgtgaattcttgcaaataccccctcaaattagagaaaaggtg |
47415830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 44665983 - 44666027
Alignment:
| Q |
21 |
aaattgtgaattcttgcaaatac-cccctcaaattagagaaaagg |
64 |
Q |
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| T |
44665983 |
aaattgtaaattcttgcaaatactcccctcaaatttgagaaaagg |
44666027 |
T |
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