View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15120_low_23 (Length: 243)
Name: NF15120_low_23
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15120_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35853811 - 35853587
Alignment:
| Q |
1 |
tttgtctctt-gaactttgtctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgagcgctaatttgcacctgaatatcctgt |
99 |
Q |
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| T |
35853811 |
tttgtctctttgaactttgtctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgagcgctaatttgcacctgaatatcctgt |
35853712 |
T |
|
| Q |
100 |
tcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaag |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35853711 |
tcaggtgcaatttttgtgtctggtgtttccgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaag |
35853612 |
T |
|
| Q |
200 |
ggaaattatccatacactagctttct |
225 |
Q |
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| T |
35853611 |
ggaaa-tatccatacactagctttct |
35853587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35748491 - 35748712
Alignment:
| Q |
1 |
tttgtctcttgaactttgtctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgag-cgctaatttgcacctgaatatcctgt |
99 |
Q |
| |
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||||||||||||||||||| ||||||||| | |||||| | ||| ||||| || |||||||||| || || | ||||||||| || |||| ||| |
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| T |
35748491 |
tttgtctcttgaactttgtttgatgctctgt--ttcattctacctgctttccatgagttcttccttt-actagaccctaatttgctattggatattttgt |
35748587 |
T |
|
| Q |
100 |
tcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaag |
199 |
Q |
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| T |
35748588 |
tcaggtgcaatttttgtatctattatttatgcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaag |
35748687 |
T |
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| Q |
200 |
ggaaattatccatacactagctttct |
225 |
Q |
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| T |
35748688 |
ggaaa-tatccatacaccggctttct |
35748712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35858386 - 35858173
Alignment:
| Q |
1 |
tttgtctcttgaactttgtctgatgctctttgattcatttcatttgcattccaagatttcttccttttacgagcgctaatttgcacctgaatatcctgtt |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||| ||||||| |||||| ||| ||||||| || | |||||| || |||| | || ||| |
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| T |
35858386 |
tttgtctctt-aactttgtctgatgctcttttcttcattttatttgcactccaaggttt-ttcctttattgaacactaattcgctactgagtttcttgtc |
35858289 |
T |
|
| Q |
101 |
caggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaagg |
200 |
Q |
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||||| |||||||||| | | || ||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||||||||||| | |||| |
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| T |
35858288 |
caggtacaatttttgtagccacttttcctgcagctgtttgctgtttaccatttgaatatgtgatgattgaaattaagaagatgcaacctgatgacaaagg |
35858189 |
T |
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| Q |
201 |
gaaattatccatacact |
217 |
Q |
| |
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|||| |||||||||||| |
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| T |
35858188 |
gaaa-tatccatacact |
35858173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 35729138 - 35729244
Alignment:
| Q |
99 |
ttcaggtgcaatttttgtgtctggtgttttcgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaa |
198 |
Q |
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||||||||||| | ||| ||||| |||||||||| ||||| ||||| |||||||| ||||||| | || ||| | |||||||||||||| |||||| |
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| T |
35729138 |
ttcaggtgcaagtagtgtatctggatttttcgcagcagcttgcagtttgccatttgattatgtgaagacacagattcagaagatgcaacctgatgctgaa |
35729237 |
T |
|
| Q |
199 |
gggaaat |
205 |
Q |
| |
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|| |||| |
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| T |
35729238 |
ggaaaat |
35729244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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