View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15120_low_6 (Length: 519)

Name: NF15120_low_6
Description: NF15120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15120_low_6
NF15120_low_6
[»] chr7 (4 HSPs)
chr7 (17-501)||(40585239-40585723)
chr7 (155-228)||(10542320-10542393)
chr7 (153-215)||(24662426-24662488)
chr7 (160-228)||(1002272-1002340)
[»] chr2 (2 HSPs)
chr2 (154-230)||(35575889-35575965)
chr2 (160-228)||(32885594-32885662)
[»] scaffold0049 (1 HSPs)
scaffold0049 (156-228)||(73265-73337)
[»] chr3 (4 HSPs)
chr3 (165-220)||(49357787-49357841)
chr3 (169-243)||(47928943-47929016)
chr3 (137-214)||(46448252-46448329)
chr3 (159-228)||(946286-946354)
[»] chr8 (2 HSPs)
chr8 (161-228)||(13927686-13927753)
chr8 (163-228)||(6561489-6561554)
[»] chr5 (1 HSPs)
chr5 (161-228)||(12206822-12206889)
[»] chr6 (1 HSPs)
chr6 (156-185)||(7480023-7480052)
[»] chr1 (1 HSPs)
chr1 (179-228)||(31630836-31630885)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 40585239 - 40585723
Alignment:
Q  17 cacagatagtagattaagaacttccattggnnnnnnnnttacgaacttgaaaatttgaatgcaagagccactaaacaataagcatctatcaatatcatca 116  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40585239 cacagatagtagattaagaacttccattggaaaaaaaattacgaacttgaaaatttgaatgcaagagccactaaacgataagcatctatcaatatcatca 40585338  T
Q  117 agtctaactaacccatccacattattaggaaaagagtgcctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585339 agtctaactaacccatccacattattaggaaaagagtgcctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttat 40585438  T
Q  217 tattccaaaaatgctcataaattaattaattaagttggtaagcgataattattataacgaggggcatattggtaaatgtatttcctatattacatgaatt 316  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585439 tattccaaaaatactcataaattaatcaattaagttggtaagcgataattattataacgaggggcatattggtaaatgtatttcctatattacatgaatt 40585538  T
Q  317 caagataattaaatgtcataataagtgtaaaaatatgtatttttacttgtaataattgagttcagagggagtagtttcaaatacctcagatattggactg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585539 caagataattaaatgtcataataagtgtaaaaatatgtatttttacttgtaataattgagttcagagggagtagtttcaaatacctcagatattggactg 40585638  T
Q  417 tgtgataacctgcgttcgtttactctcggactcatgtcttttggcatctttcttatgggatttggagaggaggaggccgagttag 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40585639 tgtgataacctgcgttcgtttactctcggactcatgtcttttggcgtctttcttatgggatttggagaggaggaggccgagttag 40585723  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 10542393 - 10542320
Alignment:
Q  155 cctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||||||||||| |||||||||||||| |||||||||  | | |||||||||||||||||||||||||||||||    
T  10542393 cctaaatttgttagactcaaatataagtaaatgtcaaccattctatccacatttaatgttattattccaaaaat 10542320  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 24662426 - 24662488
Alignment:
Q  153 tgcctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgtta 215  Q
    ||||||||||||||||||||||||||| | ||||||||| |||| |||| |||||||||||||    
T  24662426 tgcctaaatttgttggactcaaatataggtaaatgtcaactaatctatctacatttaatgtta 24662488  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 1002340 - 1002272
Alignment:
Q  160 atttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||| |||||||||||||||| |||| ||||| |||| |||||| ||||||||| ||| ||||||||||    
T  1002340 atttattggactcaaatataaacaaaagtcaactaatctatccatatttaatgtaattgttccaaaaat 1002272  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 35575965 - 35575889
Alignment:
Q  154 gcctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaatgc 230  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||  | ||||||||||||    
T  35575965 gcctgaatttgttgtacttaaatataagcaaatgtcaactaatttatccacatctaatgtttgtgttccaaaaatgc 35575889  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 32885594 - 32885662
Alignment:
Q  160 atttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    ||||||||||||| ||||||| |||||||||| |||| | |  ||||||||||||||||||| ||||||    
T  32885594 atttgttggactcgaatataaacaaatgtcaactaatctgtttacatttaatgttattattctaaaaat 32885662  T

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Target: scaffold0049 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 73265 - 73337
Alignment:
Q  156 ctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||||||||||||| |||||||||||||| || ||| |||| ||| ||||||||||  |||||||||||||||    
T  73265 ctaaatttgttggattcaaatataagcaattgccaactaatctatacacatttaatagtattattccaaaaat 73337  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 49357787 - 49357841
Alignment:
Q  165 ttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattatt 220  Q
    |||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||    
T  49357787 ttggactcaa-tataaacaaatgccaactaatttatccacatttaatgttattatt 49357841  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 47929016 - 47928943
Alignment:
Q  169 actcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaatgctcataaattaatt 243  Q
    |||||| ||||||||||||| |  | ||||||||| |||||||||||||||||| ||||| | ||||||||||||    
T  47929016 actcaactataagcaaatgttagctgatttatccatatttaatgttattattcc-aaaatacccataaattaatt 47928943  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 46448252 - 46448329
Alignment:
Q  137 attattaggaaaagagtgcctaaatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgtt 214  Q
    |||||||| | || |||||||  |||||||||  | |||||||||||||| |||| ||||||| ||||||||||||||    
T  46448252 attattagcataaaagtgcctgtatttgttgggattaaatataagcaaatttcaattaatttaaccacatttaatgtt 46448329  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 946286 - 946354
Alignment:
Q  159 aatttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||||||||||||||| |||| ||||||||||| | || |||||| |||||||| |||| || |||||||    
T  946286 aatttgttggactcaa-tataggcaaatgtcaattgatctatccatatttaatgctattgtttcaaaaat 946354  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 13927753 - 13927686
Alignment:
Q  161 tttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||| ||||||| ||||||| | |||||||| |||| ||||||||| ||||||| | |||||||||||    
T  13927753 tttgctggactcgaatataaccgaatgtcaactaatatatccacatctaatgttgtaattccaaaaat 13927686  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 6561554 - 6561489
Alignment:
Q  163 tgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||||||||| |||| ||||||| || || || | ||| | |||||||||||||||||||||||||    
T  6561554 tgttggactcgaataaaagcaaaagttaactattctatgcccatttaatgttattattccaaaaat 6561489  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 12206889 - 12206822
Alignment:
Q  161 tttgttggactcaaatataagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||| ||||||| ||||||| | |||||||| |||| ||||||||| ||||||| | |||||||||||    
T  12206889 tttgctggactcgaatataaccgaatgtcaactaatatatccacatctaatgttgtaattccaaaaat 12206822  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 7480023 - 7480052
Alignment:
Q  156 ctaaatttgttggactcaaatataagcaaa 185  Q
    ||||||||||||||||||||||||||||||    
T  7480023 ctaaatttgttggactcaaatataagcaaa 7480052  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 31630885 - 31630836
Alignment:
Q  179 aagcaaatgtcaagtaatttatccacatttaatgttattattccaaaaat 228  Q
    |||||||||| || |||| |||| ||||| ||||||||||||||||||||    
T  31630885 aagcaaatgtgaactaatctatctacattaaatgttattattccaaaaat 31630836  T

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