View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15121_low_1 (Length: 440)

Name: NF15121_low_1
Description: NF15121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15121_low_1
NF15121_low_1
[»] chr4 (16 HSPs)
chr4 (13-425)||(7765486-7765898)
chr4 (13-425)||(7786308-7786720)
chr4 (331-425)||(7773630-7773724)
chr4 (317-425)||(7908485-7908593)
chr4 (228-288)||(37826938-37826998)
chr4 (228-288)||(49048517-49048577)
chr4 (229-295)||(45372006-45372072)
chr4 (132-188)||(7813467-7813523)
chr4 (132-188)||(7822956-7823012)
chr4 (19-114)||(7877594-7877689)
chr4 (228-290)||(7800693-7800755)
chr4 (19-77)||(7908202-7908260)
chr4 (135-173)||(37827035-37827073)
chr4 (337-411)||(48863421-48863495)
chr4 (380-425)||(48898954-48898999)
chr4 (329-369)||(48852847-48852887)
[»] chr8 (2 HSPs)
chr8 (134-192)||(12200299-12200357)
chr8 (134-192)||(12444727-12444785)
[»] chr3 (2 HSPs)
chr3 (331-412)||(11015300-11015381)
chr3 (329-412)||(11005737-11005820)
[»] chr6 (1 HSPs)
chr6 (327-369)||(21015988-21016030)
[»] chr5 (1 HSPs)
chr5 (329-369)||(179218-179258)


Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 7765486 - 7765898
Alignment:
Q  13 aaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7765486 aaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccaccggatcgaaaagacaaatacttatgtctgctt 7765585  T
Q  113 ttaatactaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctc 212  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765586 ttaataccaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctc 7765685  T
Q  213 agttggtgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattataga 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765686 cgttggtgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattataga 7765785  T
Q  313 gaaggagaaggagtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 412  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765786 gaaggagaaggggtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 7765885  T
Q  413 tattgtttgagat 425  Q
    |||||||||||||    
T  7765886 tattgtttgagat 7765898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 7786308 - 7786720
Alignment:
Q  13 aaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7786308 aaagggtcatgtagaggttttatatttatgtatcgtcatccaaacatttacatatggaatccatccaccggatcgaaaagacaaatacttatgtctgctt 7786407  T
Q  113 ttaatactaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctc 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7786408 ttaataccaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctt 7786507  T
Q  213 agttggtgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattataga 312  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  7786508 agttggtgttcctcaatcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttatggcgacaattataga 7786607  T
Q  313 gaaggagaaggagtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7786608 gaaggagaaggggtggtttttaatggggctattcattggttgtcttcgcgtcgtgatatagctttggatgtcattgttggctttgatttaacggaaagga 7786707  T
Q  413 tattgtttgagat 425  Q
    |||||||||||||    
T  7786708 tattgtttgagat 7786720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 7773724 - 7773630
Alignment:
Q  331 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagat 425  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||  || | |||| ||||||  ||||||||||| |||||||| ||||||||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgatttacgttggaatgtaattgtttcctttgatttaatggaaaggaaattgtttgagat 7773630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 425
Target Start/End: Original strand, 7908485 - 7908593
Alignment:
Q  317 gagaaggagtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatatt 416  Q
    |||||||| || | |||||||| | ||||||||||||| |||  |||| |||| ||| ||||  ||||||||||| ||||||||||| ||||||||  ||    
T  7908485 gagaaggattgctatttaatggtgttattcattggttggctttacgtcgtgatttaggtttgactgtcattgttgcctttgatttaatggaaaggaagtt 7908584  T
Q  417 gtttgagat 425  Q
    |||||||||    
T  7908585 gtttgagat 7908593  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 37826998 - 37826938
Alignment:
Q  228 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 288  Q
    |||||||||||||||||||||||| ||||| ||| | |||| |||||| ||||||||||||    
T  37826998 atcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtactcac 37826938  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 49048577 - 49048517
Alignment:
Q  228 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 288  Q
    |||||||||||||||||||||||| | ||| ||||  ||||||||||| ||||||||||||    
T  49048577 atcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcac 49048517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 45372072 - 45372006
Alignment:
Q  229 tcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttacctt 295  Q
    |||||||||||||||||||| || | ||| |||||||||| |||| | |||||||||||||| ||||    
T  45372072 tcacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttccctt 45372006  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 7813467 - 7813523
Alignment:
Q  132 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 188  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7813467 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 7813523  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 7822956 - 7823012
Alignment:
Q  132 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 188  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7822956 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 7823012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 7877594 - 7877689
Alignment:
Q  19 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctttt 114  Q
    ||||| ||||| |||||| || ||||| ||||||||| ||| ||||| ||||||||||||||  |||  |||| |||||||| | ||||| |||||    
T  7877594 tcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctcctttt 7877689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 7800693 - 7800755
Alignment:
Q  228 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcactt 290  Q
    ||||||||||||| |||||||||||  ||| ||||| ||||||||||| || |||||| ||||    
T  7800693 atcacatttggaggttttctcgtttccagataatacctggaaagaaattgacggtactaactt 7800755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 7908202 - 7908260
Alignment:
Q  19 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatc 77  Q
    ||||||||||| |||||| || ||||||||| |||| |||| ||||| |||||||||||    
T  7908202 tcatgtagagggtttatacttttgtaccgtcctccagacatctacatatggaatccatc 7908260  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 37827073 - 37827035
Alignment:
Q  135 tctatatggttttggttacgatcagtctagagatgatta 173  Q
    |||||||||||||||||| || |||||||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgatta 37827035  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 48863421 - 48863495
Alignment:
Q  337 ggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagg 411  Q
    |||||||||||||||||| |||  ||||||||||||| | |  |||| ||||||| ||||  |||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcctttcgtttaacggaaagg 48863495  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 48898954 - 48898999
Alignment:
Q  380 atgtcattgttggctttgatttaacggaaaggatattgtttgagat 425  Q
    |||||||||||| |||||||||||||||||||| | |||| |||||    
T  48898954 atgtcattgttgcctttgatttaacggaaaggaaactgttagagat 48898999  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 48852847 - 48852887
Alignment:
Q  329 tttttaatggggctattcattggttgtcttcgcgtcatgat 369  Q
    |||||||||||||||||||||||||| |||  |||||||||    
T  48852847 tttttaatggggctattcattggttggcttttcgtcatgat 48852887  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 12200299 - 12200357
Alignment:
Q  134 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 192  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 12444727 - 12444785
Alignment:
Q  134 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 192  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 11015381 - 11015300
Alignment:
Q  331 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 412  Q
    ||||||||| ||||||||||||| ||||  || |||||| || |  ||||||| ||||||||||||||||||  ||||||||    
T  11015381 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaagga 11015300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 11005820 - 11005737
Alignment:
Q  329 tttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 412  Q
    ||||||||||| ||||||||||||| ||||  || |||||| |  |  ||||||| ||||||||||||||||||  ||||||||    
T  11005820 tttttaatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaagga 11005737  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 21015988 - 21016030
Alignment:
Q  327 ggtttttaatggggctattcattggttgtcttcgcgtcatgat 369  Q
    |||||||||||||||||||||||||||| |||  |||||||||    
T  21015988 ggtttttaatggggctattcattggttggcttttcgtcatgat 21016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 179218 - 179258
Alignment:
Q  329 tttttaatggggctattcattggttgtcttcgcgtcatgat 369  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  179218 tttttaatggggctattcattggttctcttttcgtcatgat 179258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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