View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15121_low_2 (Length: 362)
Name: NF15121_low_2
Description: NF15121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15121_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 7889244 - 7889078
Alignment:
| Q |
66 |
tggtggaacttattctttatttttcatctgaatcttttcttattacaggggaaccatcttagacacaaattagacaacctgataacgatggtaatgatca |
165 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7889244 |
tggtggaacttattctttattttccatctgaatcttttcttatcacaagggaaccaacttagacacaaattagacaacctgataacgatggtaatgatca |
7889145 |
T |
|
| Q |
166 |
acagcaacatccccgttagttccatccaatattgttcctgaaagcaactgcatgtgagagtcgagtg |
232 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7889144 |
acagcaacatccccattagttccatccaatattgttcctgaaagcaactgcatgtgagagtcgagtg |
7889078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 7889058 - 7888952
Alignment:
| Q |
252 |
ttttaaagttaaataagttttcctttcaataaatacagtgaatttcgtttttaattcttacnnnnnnnngt-gacatgttt-gattcctataaaaaattt |
349 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
7889058 |
ttttaaagttaaataagtttttcttccaata------gtgaatttcgtttttaattcttaaaaaaaaaagttgacatgttttgattcctataaaaaattt |
7888965 |
T |
|
| Q |
350 |
caacacataattt |
362 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7888964 |
caacacataattt |
7888952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University