View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15122_low_1 (Length: 404)
Name: NF15122_low_1
Description: NF15122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15122_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 7822341 - 7822728
Alignment:
| Q |
1 |
aatggagcggcacaaaattcaagagaagatatctgatacgactctgactcgagtgattaatctttgcagataaccaagttggtttttgaaaccaattgag |
100 |
Q |
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| T |
7822341 |
aatggagcggcacaaaattcaagagaagatatctgatccgactctgactcgagtgattaatctttgcagataaccaagttggtttttgaaaccaattgag |
7822440 |
T |
|
| Q |
101 |
acttttacttgtcacattgaagactctcccaaggatttatttatacaaggtaaattgtgggtttcacattgttaccccaattttccttttttccatatgg |
200 |
Q |
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| T |
7822441 |
acttttacttgttacattgaagactctcccaaggatttatttatacaaggtaaattgtgggtttcacattgttaccccaattttccttttttccatatgg |
7822540 |
T |
|
| Q |
201 |
agatgagannnnnnnaggccatctcagttgtattgtatttaatttatgtgcattaatatatcttgcactnnnnnnnngaaaacaattttacaatgctccg |
300 |
Q |
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| T |
7822541 |
agatgagatttttttaggccatctcagttgtattgtatttaatttatgtgcattattatatcttgcactaaaaaaaagaaaacaattttacaatgctccg |
7822640 |
T |
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| Q |
301 |
gggatgctaaggagatggctacaactgagtcgtcccgagttcggatccgagtgaaggtagcgagttgatgatgatcattatcattatt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
7822641 |
gggatgctaaggagatggctacaactgagtcgtcccgagttcggatccgagtgaaggtagcgagttgatgaggatcattattattatt |
7822728 |
T |
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