View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15122_low_2 (Length: 302)
Name: NF15122_low_2
Description: NF15122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15122_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 24030486 - 24030216
Alignment:
| Q |
16 |
cagagataagagagtgtaatgacttgctaaggcatttgagcggcaagagggtttggacgtcaaggaatactaggatttcgacgatcagatcatcgggaag |
115 |
Q |
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| T |
24030486 |
cagaaataagagagtgtaatgacttgctaaggcatttgagcggcaagagggtttggacgtcaaggaatactaggatttcgacgatcagatcatcgggaag |
24030387 |
T |
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| Q |
116 |
gagctgttccgtcgacgaaagggcattggattgaggtgagggcattgaagttgaaaaatgggttgacgttgaagtattgattgacaccaacaatgcaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24030386 |
gagctgttccgtcgacgaaagggcattggattgaggtgagggcattgaagttgaaaaatgggttgacgttgaagtattgattgacaccaacaatgcaaac |
24030287 |
T |
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| Q |
216 |
cagttgtgcgatttcaagagaaaccctaacctaacaatgcggcaagttctaagcgtgctgttataattact |
286 |
Q |
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| T |
24030286 |
cagttgtgcgatttcaagagaaaccctaacctaacaatgcggcaagttctaagcgtgctgttataattact |
24030216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 24020994 - 24020893
Alignment:
| Q |
21 |
ataagagagtgtaatgacttgctaaggcatttgagcggcaagagggtttggacgtcaaggaatactaggatttcgacgatcagatcatcgggaaggagct |
120 |
Q |
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|||||||||| ||||||||||||||| |||||||| || |||| |||||||||||||||||||| | |||||||||||| ||||| || ||||||| || |
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| T |
24020994 |
ataagagagtttaatgacttgctaagacatttgaggggaaagatggtttggacgtcaaggaataacaagatttcgacgattagatcgtccggaaggaact |
24020895 |
T |
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| Q |
121 |
gt |
122 |
Q |
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|| |
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| T |
24020894 |
gt |
24020893 |
T |
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