View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15122_low_3 (Length: 279)
Name: NF15122_low_3
Description: NF15122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15122_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 38429285 - 38429537
Alignment:
| Q |
18 |
atattaactattataatcaaatcaaagcaaaatcatagaagtacatgacaacaaaagagcatcttttcacgttgcttatatccccaattaacatagtgac |
117 |
Q |
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| T |
38429285 |
atattaactattataatcaaatcaaagcaaaatcatagaagtacatgacaacaaaagagcatcttttcacgttgcttatatccccaattaacatagtgac |
38429384 |
T |
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| Q |
118 |
actagctaattaaagtgaaaataagttaaaatatacctacccatttcctattttagtcattttcttatatgcctcattctacgaggctttctctcaactt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38429385 |
cctagctaattaaagtgaaaataagttaaaatatacctacccatttcctattttagtcattttcttatatgcctcattctacgaggctttctctcaactt |
38429484 |
T |
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| Q |
218 |
g--acaagttggatcattgtgccacacagcacaaacaaatacctttaacctat |
268 |
Q |
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| T |
38429485 |
gacacaagttggatcattgtgccacacagcacaaacaaatacctttaacctat |
38429537 |
T |
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